Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1092 399 2e-106 seq2283 127 2e-24 seq335 123 3e-23 seq1473 109 6e-19 >seq1092 Length=189081 Score = 399 bits (442), Expect = 2e-106 Identities = 573/802 (71%), Gaps = 13/802 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| ||||||||||||||||||||||| |||||||| | ||||||| | |||||| Sbjct 137793 ATCTGGCAAATGTACAAAAAGGCCGAGGCGTCCTTCTGGACTGCCGAGGAGATTGACCTG 137734 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| | ||||||| | ||| ||||| | |||| | |||||| | Sbjct 137733 TCCAAGGACCTGCACGACTGGAACAACCGCATGAACAAGGACGAAAAGTACTTCATCTCG 137674 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 |||||||||||||| || ||||| |||||||| ||||||||||| ||||||||||| Sbjct 137673 CACGTGCTGGCCTTCTTTGCCGCGTCGGACGGCATTGTCAACGAGAACCTGGTCGAGCGC 137614 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | ||||| ||| | ||||||| || ||||||||||||||||||||| ||| Sbjct 137613 TTCTCGGGCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTTCAGATCATGATG 137554 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTC 116928 |||||| | ||||| || | || ||| || || ||||||||| | | || | | Sbjct 137553 GAGAACATCCACTCCGAGACATACTCGCTGCTGATTGACACGTACATCAAGGAGCCCGCC 137494 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 | | |||| | |||| |||||||| || || || || ||| || ||||| Sbjct 137493 --CAGCGCAGCTAC--CTGTTTAACGCCATTGATACTATTCCCTGCATCCGCCGCAAGGC 137438 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 ||| ||||| || ||||| |||| | ||| | |||| | | | || |||||||| Sbjct 137437 CGACTGGGCCCTCAAGTGGATTGCCGACCACGAGTCGACCTTTGCCCAACGTCTGGTGGC 137378 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 ||| || |||||||| ||| ||||||| |||||| || || |||| |||||||| Sbjct 137377 CTTTGCCGCCGTCGAAGGCATCTTCTTCTCGGGCGCCTTTGCTTCCATCTTTTGGCTGCG 137318 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 || ||||| ||||||||||||||||| || ||||||||| || ||| | |||||||| Sbjct 137317 CAAGCGCGGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTGATTTCCCGCGACGAGGG 137258 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGC 117228 ||||| ||||||||||| |||| ||| ||| | | || || ||| | Sbjct 137257 CCTGCACACAGACTTTGCCTGCCTGCTCTTCTCGCACCTCAACAACCGCCCCAGCAAGAA 137198 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGC 117288 || | ||| ||| |||||||||| |||||||| || || ||| | ||||| || Sbjct 137197 GCTGATTGAGGAAATCATCACCGACGCTGTCGCCATTGAAAAGGAGTTCTTGACCGACGC 137138 Query 117289 GCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCG 117347 ||||| |||| |||||| || | || ||| |||| ||| ||||| ||||| | Sbjct 137137 CCTGCC-CTGCGCTCTGCTCGGCATGAACGCCGACCTGATGAAGCAGTACATTGAGTTTG 137079 Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGC 117407 | |||||| | |||||| ||| || | | || ||| |||| | | ||||||| Sbjct 137078 TTGCCGACCGTCTGCTGGTCGCCCTCGGCAACGAAAAGGTCTACCGCTCCACCAACCCCT 137019 Query 117408 TGGACTTTATGAACCTCATCTC 117429 | ||||| ||| | |||||| Sbjct 137018 TTGACTTCATGGAGAACATCTC 136997 >seq2283 Length=86879 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| || ||||| | || || ||| || || Sbjct 41112 ATGCAAATCTTCGTCAAGACTCTTACCGGCAAGACAATCACTCTTGAGGTGGAATCCTCC 41171 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | ||| || || | || || |||||||| || |||||||| Sbjct 41172 GATACCATCGACAATGTGAAGTCGAAGATCCAGGATAAGGAGGGCATTCCTCCGGACCAG 41231 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | |||||| || |||||||| || | || ||||| |||||||||| Sbjct 41232 CAGCGCCTGATTTTCGCGGGTAAGCAGCTGGAGGATGGCCGTACCCTGTCCGACTACAAC 41291 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| || || || || |||| || | |||||| Sbjct 41292 ATCCAGAAGGAGTCCACCCTCCACCTGGTTCTGCGTCTGCGTGGCGGC 41339 Score = 123 bits (136), Expect = 3e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| |||||||| |||| ||||| | | Sbjct 40884 ATGCAAATCTTCGTCAAGACTCTTACCGGCAAGACCATCACTCTCGAAGTCGAGTCGTCG 40943 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| || || | ||||| ||||| || ||| ||||||| Sbjct 40944 GATACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCA 41002 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | |||||| || |||||||| || | || ||||| |||||||| Sbjct 41003 GCAGCGTCTGATTTTCGCGGGTAAGCAGCTGGAGGATGGCCGTACCCTGTCTGACTACAA 41062 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 41063 CATCCAGAAGGAGTCTACTCTTCACCTGGT 41092 Score = 120 bits (132), Expect = 3e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 40703 TAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAA 40762 |||| || | |||||||| || |||||| | || || ||| | |||||| | | | | Sbjct 40385 TAAATACAGTGACGGGCAAGACTATCACCCTTGAGGTGGAATCTTCCGACACCATCGACA 40444 Query 40763 CGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCT 40822 ||||| ||| || | ||||| ||||| || ||| |||||||||| || || |||| Sbjct 40445 ATGTCAAGTCAAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGTCTGATCT 40504 Query 40823 ACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGG 40882 || || || |||||||| |||| || ||||| |||||| ||||||||||||||| Sbjct 40505 TTGCTGGAAAGCAGCTGGAGGACGGCCGTACCCTGTCCGACTATAACATCCAGAAGGAGT 40564 Query 40883 CCACGCTGCATCTAGT 40898 |||| || || || || Sbjct 40565 CCACTCTCCACCTGGT 40580 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755 ||| |||| || || ||||| ||||| |||||||| |||| ||||| | | || | | Sbjct 40662 ATAGTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAAGTCGAGTCGTCGGATACC 40721 Query 40756 GTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACG 40814 | | |||| ||||| || || | || || |||||||| || |||||||||| || Sbjct 40722 ATTGACAACG-TCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCTCCGGACCAGCAGCG 40780 Query 40815 ACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 40874 || |||| || || || |||||||| |||| || ||||| |||||||||||||| Sbjct 40781 TCTGATCTTTGCTGGAAAGCAGCTGGAGGACGGCCGTACCCTGTCTGACTACAACATCCA 40840 Query 40875 GAAGGAGGCCACGCTGCATCTAGT 40898 ||||||| | || || || || || Sbjct 40841 GAAGGAGTCTACTCTTCACCTGGT 40864 >seq335 Length=221524 Score = 123 bits (136), Expect = 3e-23 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || ||||| || || || ||| |||| || || || Sbjct 117241 AAGATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 117182 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | ||||| || |||| ||||| |||||||| ||| ||||| Sbjct 117181 TCGGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGAC 117122 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| |||||||| || | ||||| || |||||| Sbjct 117121 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCTGACTAC 117062 Query 40867 AACATCCAGAAGG--AGGCCACGCT 40889 ||||||||||||| || ||||||| Sbjct 117061 AACATCCAGAAGGTCAGTCCACGCT 117037 >seq1473 Length=183801 Score = 109 bits (120), Expect = 6e-19 Identities = 135/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || ||||| ||| | || ||||| || | |||| | Sbjct 105214 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGACACGATC 105155 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | ||||| |||||||| ||| |||||||||| || || Sbjct 105154 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCT 105096 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| || ||||| ||||| || || | |||||||| |||||||||||| ||||| Sbjct 105095 GATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAA 105036 Query 40878 GG 40879 || Sbjct 105035 GG 105034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515204290844400