Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2283 111 2e-19 seq335 95.1 1e-14 seq1473 87.8 2e-12 >seq2283 Length=86879 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| |||| ||| || || | || || ||||||||||| ||||| Sbjct 41075 CTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTACCCGCGAA 41016 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | |||||||||| ||| || |||| ||| Sbjct 41015 AATCAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 40957 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || || ||| || || |||| |||||||| ||||| || || ||||| | Sbjct 40956 TGTCAATGGTATCCGACGACTCGACTTCGAGAGTGATGGTCTTGCCGGTAAGAGTCTTGA 40897 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 40896 CGAAGATTTGCAT 40884 Score = 102 bits (112), Expect = 9e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||| || | ||| |||||| || || ||||| || | ||| || || | Sbjct 41327 ACGCAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCC 41268 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || ||||||||||| ||||| || || ||||||||||| | || | || |||||| Sbjct 41267 ATCCTCCAGCTGCTTACCCGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTT 41208 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| || || | | | | || ||| |||||||| || | ||||| Sbjct 41207 ATCCTGGATCTTCGACTTCACATTGTCGATGGTATCGGAGGATTCCACCTCAAGAGTGAT 41148 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || ||||| || ||||||||||| Sbjct 41147 TGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 41112 Score = 95.1 bits (104), Expect = 1e-14 Identities = 131/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| |||| ||| || || |||| || |||||||| ||||| || Sbjct 40847 CTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTCCTCCAGCTGCTTTCCAGCAAA 40788 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | || |||||| ||| ||| || |||| ||| Sbjct 40787 GATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTATCCTGGATCTTGGACTTGA-CGT 40729 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || || ||| || || |||| |||||||| ||||| || || ||||| | Sbjct 40728 TGTCAATGGTATCCGACGACTCGACTTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGA 40669 Query 43171 C 43171 | Sbjct 40668 C 40668 Score = 89.7 bits (98), Expect = 6e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || || || || | ||| || || |||| || |||||||| ||||| || Sbjct 40563 CTCCTTCTGGATGTTATAGTCGGACAGGGTACGGCCGTCCTCCAGCTGCTTTCCAGCAAA 40504 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | |||||||||| ||| ||| |||| | Sbjct 40503 GATCAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTTGACTTGACATT 40444 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | |||||| |||||||| || | ||||| || |||||||| | || |||| Sbjct 40443 GTCGATGGTGTCGGAAGATTCCACCTCAAGGGTGATAGTCTTGCCCGTCACTGTATTTA 40385 >seq335 Length=221524 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| |||| |||||| || | || || |||||||| |||||||| | Sbjct 117049 CCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 117108 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTC 43112 | || ||||||||||| | || | || |||||||||| ||| | || | |||| | Sbjct 117109 TCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGACATTG 117167 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| || || || |||| || || || || ||||| || ||||| || Sbjct 117168 TCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACG 117227 Query 43173 AAGATTTGCATTTT 43186 || || ||||| || Sbjct 117228 AAAATCTGCATCTT 117241 >seq1473 Length=183801 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| ||||| ||||| || | ||| || || | || || |||||||| ||||| || | Sbjct 105034 CCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 105093 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | || ||||||||||| | || | || |||||||||| ||| || |||| ||| | Sbjct 105094 TCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTG 105152 Query 43114 -CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||| || || || || | || ||||| || ||||| || ||||| || Sbjct 105153 TCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACG 105212 Query 43173 AA 43174 || Sbjct 105213 AA 105214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571801053028200