Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2283 140 2e-28 seq335 93.3 3e-14 seq1473 89.7 3e-13 >seq2283 Length=86879 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | ||| |||||||| | || || ||||| ||||||||||||||| Sbjct 41338 CCGCCACGCAGACGCAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 41279 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| | || |||| |||||| || |||||||| || ||||||||||| || Sbjct 41278 AGGGTACGGCCATCCTCCAGCTGCTTACCCGCGAAAATCAGGCGCTGCTGGTCCGGAGGA 41219 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||| || ||||| ||| | || | | || | ||||| ||||| || Sbjct 41218 ATGCCCTCCTTATCCTGGATCTTCGACTTCACATTGTCGATGGTATCGGAGGATTCCACC 41159 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || |||||||| ||||| || || ||||| ||||| Sbjct 41158 TCAAGAGTGATTGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 41112 Score = 134 bits (148), Expect = 9e-27 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | |||| || ||||| ||||||||||| ||||| |||| | || Sbjct 41095 AGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCC 41036 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || |||||||| || ||||||||||| ||| | | ||||||||| Sbjct 41035 TCCAGCTGCTTACCCGCGAAAATCAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCC 40976 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | ||| | ||| ||||| || | |||||||| Sbjct 40975 TGGATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCGACTTCGAGAGTGATGGTC 40916 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| ||||| || || ||||| ||||| Sbjct 40915 TTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 40884 Score = 113 bits (124), Expect = 3e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | |||| || ||||| ||||||||||| ||||| |||| |||| Sbjct 40867 AGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTCC 40808 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || || || || || ||||||||||| || | || |||||| || Sbjct 40807 TCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTATCC 40748 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | ||| | ||| ||||| || | |||||||| Sbjct 40747 TGGATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCGACTTCGAGAGTGATGGTC 40688 Query 34358 TTGCCGGTGAGAGTTTTCAC 34377 ||||||||||| || || || Sbjct 40687 TTGCCGGTGAGGGTCTTGAC 40668 Score = 100 bits (110), Expect = 2e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | ||| || ||||| ||||| ||||||||||| |||| |||| Sbjct 40583 AGAACCAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCGGACAGGGTACGGCCGTCC 40524 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || || || || || ||||||||||| ||| | | ||||||||| Sbjct 40523 TCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCC 40464 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | || | | || | |||| ||||| || || | ||||| || Sbjct 40463 TGGATCTTTGACTTGACATTGTCGATGGTGTCGGAAGATTCCACCTCAAGGGTGATAGTC 40404 Query 34358 TTGCCGGT 34365 ||||| || Sbjct 40403 TTGCCCGT 40396 >seq335 Length=221524 Score = 93.3 bits (102), Expect = 3e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| ||||||||||| ||||| ||| | || |||| ||||||||| ||||| || Sbjct 117051 TTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 117110 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 || ||||||||||| ||| | || ||||||||| ||||| ||| | || | | Sbjct 117111 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 117170 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381 || | || | || || || || | || || || || || || || || || || || Sbjct 117171 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAAA 117230 Query 34382 ATCTGCATC 34390 ||||||||| Sbjct 117231 ATCTGCATC 117239 >seq1473 Length=183801 Score = 89.7 bits (98), Expect = 3e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| ||||||||||||||||| ||| | || || | ||||||||| || || || Sbjct 105036 TTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 105095 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 || ||||||||||| ||| | || ||||||||| ||||| ||| | | | | Sbjct 105096 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 105155 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380 |||| || | || ||||| |||| || ||||| || || || || || || || || Sbjct 105156 ATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 105214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323062884826400