Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq335 104 2e-17 seq2283 98.7 8e-16 >seq335 Length=221524 Score = 104 bits (114), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 45137 AGCGTGCTCT--CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTT 45194 |||||| || ||||||| ||||||||||| ||| ||| | || ||||| || | Sbjct 117037 AGCGTGGACTGACCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCCTCCAGCTGCT 117096 Query 45195 TTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTT 45254 | || ||||| |||| ||||| ||||| || || | |||||||||||| ||| || Sbjct 117097 TGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGG 117156 Query 45255 GCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCA 45314 ||| || | | ||||| ||| ||||| | |||||||||||| ||||||| Sbjct 117157 ACTTGACATTGTCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCA 117216 Query 45315 GAGTCTTCACAAAGATTTGCATGTTG 45340 | ||||| || || || ||||| ||| Sbjct 117217 GGGTCTTGACGAAAATCTGCATCTTG 117242 >seq2283 Length=86879 Score = 98.7 bits (108), Expect = 8e-16 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| ||||| |||||| ||| || |||| ||| Sbjct 40580 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCGGACAGGGTACGGCCGTCCTCC 40521 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| || || |||| ||||| ||||| || || | ||||||||||||| Sbjct 40520 AGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGG 40461 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | |||| | |||||||| | ||| || |||||| Sbjct 40460 ATCTTTGACTTGACATTGTCGATGGTGTCGGAAGATTCCACCTCAAGGGTGATAGTCTTG 40401 Query 45308 CCCGTCA 45314 ||||||| Sbjct 40400 CCCGTCA 40394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395064053323615