Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1750 156 5e-33 >seq1750 Length=138661 Score = 156 bits (172), Expect = 5e-33 Identities = 456/698 (65%), Gaps = 16/698 (2%) Strand=Plus/Minus Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 ||| || || | |||||||||| | ||| | ||| | || || || ||||| || Sbjct 35643 AGGGCACTCGTTGGGACACATCAGGGTCCAGTTCTCGTTCTTCTCGACACGCTTCATGAA 35584 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 | || |||||||| ||||||| || || || | | | ||||| || || Sbjct 35583 CATGTCGGGAATCCACAGAGCTAGGAACAGGTCACGGGCGCGGACCTCCTCCTTACCATG 35524 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 |||||| || || |||||| | | | ||| | |||||||| |||| ||| ||||| Sbjct 35523 ATTCTTGCGCAGGTCAAGGAACTCAAACACATCGGCGTGCCACGGCTCCAGGTAAATGGC 35464 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | | ||||| || ||||| || ||||| || | || | || ||||| || | || Sbjct 35463 AAAAGCACCAGGGCGCTTGTTGCCGCCCTGGTCGACATAGCGGGCAGTGTTGTTGAACAC 35404 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 | || ||| || ||||| ||||| || |||| |||||||| | || || ||| | Sbjct 35403 GCGCAGCATGGGGATAATGCCGTTGGAGGTACCGTTGGTACCAGCAATGTACGAGCCAGT 35344 Query 63521 GGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578 ||| || ||| || |||| | || || || || ||||| || || || | || Sbjct 35343 GGCGCGGATACGGTGAACATTGA--GGCCGATACCACCAGCCATCTTGGAAATCATAGCA 35286 Query 63579 CATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63638 || || | || || || |||||||| || || || |||||| || ||||| Sbjct 35285 CAAGTCTTGAGAGTATCGTAAATGCCTTCAATCGAGTCCTCCTTCATGTCAACCAGAAAG 35226 Query 63639 CAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698 || |||| ||| ||| ||| || || || || | || || || ||||| ||| Sbjct 35225 CAAGATGACAGCTGGGCCTGAGGAGTACCAGCGTTGAACAGAGTGGGCGAGGCGTGAGTA 35166 Query 63699 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT-----AGCTGAGTCTAT-ATCCCAT 63752 || | || || | || |||||||||||||| | || ||| | | |||| Sbjct 35165 AAGAACTTGCTCGACATGAGGTTGTACGTCTCAATGACGCGGTCGACTCTGTCACCCCA- 35107 Query 63753 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTG 63812 |||| || || || |||||||| | ||||||||| || | || ||||| ||| | Sbjct 35106 -GATG----CCAACAGCCACACGCATAATCATGTGCTGGGGACGCTCGACAATCTTGCCG 35052 Query 63813 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 63872 | | |||| || ||| || |||| || || || ||||| || | ||| |||| Sbjct 35051 TCCAACTTCAGCAGGTACGAACGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTAAAG 34992 Query 63873 TCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 || || ||||| | ||| | || | |||| |||||| Sbjct 34991 TCACGATCGTACACAATGGCAGAGTCCAGCTCATCCTT 34954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629799374653200