Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1092 147 2e-30 seq2283 96.9 3e-15 >seq1092 Length=189081 Score = 147 bits (162), Expect = 2e-30 Identities = 364/541 (67%), Gaps = 21/541 (4%) Strand=Plus/Minus Query 52534 AACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATC 52593 ||||| |||| | | |||| || | ||| |||| || ||||| | || ||||| Sbjct 137475 AACGCCATTGATACTATTCCCTGCATCCGCCGCAAGGCCGACTGGGCCCTCAAGTGGATT 137416 Query 52594 GAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTG 52653 | || || | | || |||||| |||||||||| || ||||| || ||||| | Sbjct 137415 GCCGACCACGAGTCGACCTTTGCCCAACGTCTGGTGGCCTTTGCCGCCGTCGAAGGCATC 137356 Query 52654 tttttttCGGGTAGTTTTGCGGCAATATTTTACAT-CAAAACCTTGGGCATAATGCCCGG 52712 || || ||||| ||||| | || |||| | | || | || | | |||||||| Sbjct 137355 TTCTTCTCGGGCGCCTTTGCTTCCATCTTTTGGCTGCGCAAGCGCGGTC-TCATGCCCGG 137297 Query 52713 CCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTG 52772 ||| || ||| ||||||| |||| || |||||||| || |||||||||| ||||| || Sbjct 137296 CCTGACCTTTTCCAACGAGCTGATTTCCCGCGACGAGGGCCTGCACACAGACTTTGCCTG 137237 Query 52773 TTTG-TATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAA----ATTCTAGAC 52827 || | || | ||| | | || || | | | || || ||| || Sbjct 137236 CCTGCTCTTCT----CGCACCTCAAC----AACCGCCCCAGCAAGAAGCTGATTGAGGAA 137185 Query 52828 ATGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCA 52887 || | | || || |||| ||||||||| ||||| || || ||||| | ||| | Sbjct 137184 ATCATCACCGACGCTGTCGCCATTGAAAAGGAGTTCTTGACCGACGCCCTGCCCTGCGCT 137125 Query 52888 TTGTTGGGCATGAACGC-GACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACT 52946 || | ||||||||||| |||| ||||| ||||||| ||||||||||| ||| | || Sbjct 137124 CTGCTCGGCATGAACGCCGACC-TGATGAAGCAGTACATTGAGTTTGTTGCCGACCGTCT 137066 Query 52947 GTTGATGCAGCTCGGTCAGCCGAAATACTATAATGCGC--GTAACCCCTTTTCGTTTATG 53004 | || | ||||| || ||||| | || || | ||||||||| || ||| Sbjct 137065 GCTGGTCGCCCTCGG-CA-ACGAAAAGGTCTACCGCTCCACCAACCCCTTTGACTTCATG 137008 Query 53005 AACAACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTACAAA 53064 | ||||| ||||||| ||||| || ||||| ||||||| ||||| ||||| ||| || Sbjct 137007 GAGAACATCTCGCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGACTACCAA 136948 Query 53065 A 53065 | Sbjct 136947 A 136947 >seq2283 Length=86879 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 |||||||| || | ||||| ||| | ||| | || ||||| || || ||||| || ||| Sbjct 41341 TGGCCGCCACGCAGACGCAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 41282 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || || | || || ||||| ||||| || | ||||| || ||||| || ||| Sbjct 41281 GACAGGGTACGGCCATCCTCCAGCTGCTTACCCGCGAAAATCAGGCGCTGCTGGTCCGGA 41222 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || ||||| || || || ||| || || | | || | || |||| || ||| Sbjct 41221 GGAATGCCCTCCTTATCCTGGATCTTCGACTTCACATTGTCGATGGTATCGGAGGATTCC 41162 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||| || | ||||||||||| | || || ||||| ||||||||| Sbjct 41161 ACCTCAAGAGTGATTGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCATA 41111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496049645148000