Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1750 163 4e-35 seq1092 123 4e-23 >seq1750 Length=138661 Score = 163 bits (180), Expect = 4e-35 Identities = 461/701 (66%), Gaps = 18/701 (3%) Strand=Plus/Minus Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACT-CTCCATCATCCTTTACTCGTTTCAT 79949 ||||| || |||| |||||||||| | ||| | ||| || || | || || ||||| Sbjct 35645 CCAGGGCACTCGTTGGGACACATCAGGGTCCAGTTCTCGTTCTTC-TCGACACGCTTCAT 35587 Query 79950 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCC 80009 || | || |||||||| ||||||| || || || | || | |||||| || || Sbjct 35586 GAACATGTCGGGAATCCACAGAGCTAGGAACAGGTCACGGGCGCGGACCTCCTCCTTACC 35527 Query 80010 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 80069 |||||| || || |||||| | | | ||| | |||||||| |||| ||| || Sbjct 35526 ATGATTCTTGCGCAGGTCAAGGAACTCAAACACATCGGCGTGCCACGGCTCCAGGTAAAT 35467 Query 80070 GGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 80129 ||| | | | || || || ||||| || ||||| || | || | || ||||| || | Sbjct 35466 GGCAAAAGCACCAGGGCGCTTGTTGCCGCCCTGGTCGACATAGCGGGCAGTGTTGTTGAA 35407 Query 80130 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCC 80189 || | || ||| || ||||| || ||||| ||||| ||||| || | || || || Sbjct 35406 CACGCGCAGCATGGGGATAATGCCGTTGGAGGTACCGTTGGTACCAGCAATGTACGAGCC 35347 Query 80190 ACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 80247 | |||| || ||| || |||| | || || || || ||||| || || || | Sbjct 35346 AGTGGCGCGGATACGGTGAACATTGA--GGCCGATACCACCAGCCATCTTGGAAATCATA 35289 Query 80248 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGA 80307 || || || | ||||| || ||||| || || || || |||||| || ||| Sbjct 35288 GCACAAGTCTTGAGAGTATCGTAAATGCCTTCAATCGAGTCCTCCTTCATGTCAACCAGA 35229 Query 80308 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 80367 || || |||| ||| || ||| || || || || | || || || ||||| Sbjct 35228 AAGCAAGATGACAGCTGGGCCTGAGGAGTACCAGCGTTGAACAGAGTGGGCGAGGCGTGA 35169 Query 80368 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT-----AGCTGATTCTAT-ATCC 80421 ||||| | || |||| || |||||||||||||| | || ||| | | || Sbjct 35168 GTAAAGAACTTGCTCGACATGAGGTTGTACGTCTCAATGACGCGGTCGACTCTGTCACCC 35109 Query 80422 CATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 80481 || |||| || || || |||||||| | ||||||||| || | || || |||||| Sbjct 35108 CA--GATG----CCAACAGCCACACGCATAATCATGTGCTGGGGACGCTCGACAATCTTG 35055 Query 80482 TTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 80541 | | |||| || ||| || |||| || || || ||||| || | ||| | Sbjct 35054 CCGTCCAACTTCAGCAGGTACGAACGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTA 34995 Query 80542 AAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 80582 ||||| || ||||| | ||| | |||| || | |||||| Sbjct 34994 AAGTCACGATCGTACACAATGGCAGAGTCCAGCTCATCCTT 34954 >seq1092 Length=189081 Score = 123 bits (136), Expect = 4e-23 Identities = 354/543 (65%), Gaps = 6/543 (1%) Strand=Plus/Plus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 |||||| |||||||| | ||| || ||||||||||| || || |||||||| || || Sbjct 137251 GTGCAGGCCCTCGTCGCGGGAAATCAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACC 137310 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093 ||||| |||||||| ||||| ||||| | || || |||||||| ||||| || || Sbjct 137311 GCGCTTGCGCAGCCAAAAGATGGAAGCAAAGGCGCCCGAGAAGAAGATGCCTTCGACGGC 137370 Query 50094 GGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCCACTTTTGAGC 50150 ||||||||| || || | | || | | | || ||| |||||||| | || Sbjct 137371 GGCAAAGGCCACCAGACGTTGGGCAAAGGTCGACTCGTGGTCGGCAATCCACTTGAGGGC 137430 Query 50151 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 50210 ||| |||||||| | || || || || || ||||| ||||| || ||| | Sbjct 137431 CCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTATCAATGGCGTTAAACAGGTAGCTGCG 137490 Query 50211 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 50270 | || || | || || || |||| || || | || || || ||||| Sbjct 137491 CTGGGCGGGCTCCTTGATGTACGTGTCAATCAGCAGCGAGTATGTCTCGGAGTGGATGTT 137550 Query 50271 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACA 50330 || || |||||||| |||||||| || | ||||||| ||||| || || | Sbjct 137551 CTCCATCATGATCTGAAAGCCGTAGAAGCAGCGGGCCTCGGGGATCTGGACCTCGCCCGA 137610 Query 50331 AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 50390 || || || | | || || || || || ||||| || ||||| || |||| || Sbjct 137611 GAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGACGCGGCAAAGAAGGCCAGCAC 137670 Query 50391 ATGTTTTATAAAATGTTTTTCG---TTGGGTGTTAGTTTATTCCAATCATTGATATCTTT 50447 || || || | |||||| ||| | | || ||||| || | | || || Sbjct 137671 GTGCGAGATGAAGTACTTTTCGTCCTTGTTCATGCGGTTGTTCCAGTCGTGCAGGTCCTT 137730 Query 50448 AGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 50507 || | || | || || | ||||| || || ||||| |||||||| ||||| | ||| Sbjct 137731 GGACAGGTCAATCTCCTCGGCAGTCCAGAAGGACGCCTCGGCCTTTTTGTACATTTGCCA 137790 Query 50508 GAT 50510 ||| Sbjct 137791 GAT 137793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718248015096600