Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1750 158 2e-33 seq1092 114 2e-20 >seq1750 Length=138661 Score = 158 bits (174), Expect = 2e-33 Identities = 460/701 (66%), Gaps = 18/701 (3%) Strand=Plus/Minus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACT-CTCCATCATCATTTACTCGTTTCAT 72032 ||||| || || || |||||||||| | ||| | ||| || || | || || ||||| Sbjct 35645 CCAGGGCACTCGTTGGGACACATCAGGGTCCAGTTCTCGTTCTTC-TCGACACGCTTCAT 35587 Query 72033 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCC 72092 || | || |||||||| ||||||| || || || | || | |||||| || || Sbjct 35586 GAACATGTCGGGAATCCACAGAGCTAGGAACAGGTCACGGGCGCGGACCTCCTCCTTACC 35527 Query 72093 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 72152 |||||| || || |||||| | | | ||| | |||||||| |||| ||| || Sbjct 35526 ATGATTCTTGCGCAGGTCAAGGAACTCAAACACATCGGCGTGCCACGGCTCCAGGTAAAT 35467 Query 72153 GGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 72212 ||| | | | || || || ||||| || ||||| || | || | || ||||| || | Sbjct 35466 GGCAAAAGCACCAGGGCGCTTGTTGCCGCCCTGGTCGACATAGCGGGCAGTGTTGTTGAA 35407 Query 72213 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 72272 || | || ||| || ||||| || ||||| | ||| ||||| || | || || || Sbjct 35406 CACGCGCAGCATGGGGATAATGCCGTTGGAGGTACCGTTGGTACCAGCAATGTACGAGCC 35347 Query 72273 ACTGGCACGAATATTGCTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 72330 | |||| || ||| | || |||| | || || || || ||||| || || || | Sbjct 35346 AGTGGCGCGGATACGGTGAACATTGA--GGCCGATACCACCAGCCATCTTGGAAATCATA 35289 Query 72331 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 72390 || || || | ||||| || ||||| || || || ||| |||||| || ||| Sbjct 35288 GCACAAGTCTTGAGAGTATCGTAAATGCCTTCAATCGAGTCCTCCTTCATGTCAACCAGA 35229 Query 72391 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450 || || |||| ||| || ||| || || || || | || || || ||||| Sbjct 35228 AAGCAAGATGACAGCTGGGCCTGAGGAGTACCAGCGTTGAACAGAGTGGGCGAGGCGTGA 35169 Query 72451 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT-----AGCTGATTCTAT-ATCC 72504 ||||| | || |||| || |||||||||||||| | || ||| | | || Sbjct 35168 GTAAAGAACTTGCTCGACATGAGGTTGTACGTCTCAATGACGCGGTCGACTCTGTCACCC 35109 Query 72505 CATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTG 72564 || |||| || || || |||||||| | ||| ||||| || | || || |||||| Sbjct 35108 CA--GATG----CCAACAGCCACACGCATAATCATGTGCTGGGGACGCTCGACAATCTTG 35055 Query 72565 TTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 72624 | | |||| || ||| || |||| || || || ||||| || | ||| | Sbjct 35054 CCGTCCAACTTCAGCAGGTACGAACGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTA 34995 Query 72625 AAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTT 72665 ||||| || ||||| | ||| | || | || | |||||| Sbjct 34994 AAGTCACGATCGTACACAATGGCAGAGTCCAGCTCATCCTT 34954 Score = 86.0 bits (94), Expect = 8e-12 Identities = 186/278 (67%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 ||||||||||| || | | || || | ||||| || ||||||||||| || || ||| Sbjct 36827 GTAAACTGAATAGGCGCCGCAGCAGCCTGAGTACGCAGGTAGTACATGCCCGTCTTGAGA 36768 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920 || || |||| ||| ||| ||||| || || | ||| | |||| || ||| Sbjct 36767 CCCAGCTTCCAGCCGGCAAAGTGCATGCTGGTAATCTTGCCCATGGTAGGGTCCTTCATG 36708 Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 70980 ||||| || | |||||| || ||||| ||||| || | ||| |||||||| | | Sbjct 36707 TGAATGTTGAGCGACTGCGACTGGTCGATAAAGGCACCACGGTCGGCAGCCATCTGCACC 36648 Query 70981 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 71040 | ||| || | ||| ||||| | || || || | ||| || || || |||| | Sbjct 36647 ACCGTGCGCTGCGAAATCTCCCACACTGTCTTGTACAGAGCCTTGATGTCGTCGGGAATG 36588 Query 71041 TTTG---TATTCTGAATGGATCCACCATCTGCAATAAT 71075 | | | |||||||| || || || |||||||| Sbjct 36587 CTGGGAATGTTCTGAATAGAACCGTTCTCGGCAATAAT 36550 >seq1092 Length=189081 Score = 114 bits (126), Expect = 2e-20 Identities = 354/544 (65%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 |||||| ||||| || | ||| | ||||||||||| || || |||||||| || || Sbjct 137251 GTGCAGGCCCTCGTCGCGGGAAATCAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACC 137310 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198 ||||| |||||||| || || ||||| | || || |||||||| ||||| || || Sbjct 137311 GCGCTTGCGCAGCCAAAAGATGGAAGCAAAGGCGCCCGAGAAGAAGATGCCTTCGACGGC 137370 Query 42199 CGCAAAGGCAATAAGTCTCTCTCCATA-ACCGGCAC--TGTCATGTATCCACTTTTGAGC 42255 |||||||| | || | | || | || | | ||| |||||||| | || Sbjct 137371 GGCAAAGGCCACCAGACGTTGGGCAAAGGTCGACTCGTGGTCGGCAATCCACTTGAGGGC 137430 Query 42256 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 42315 ||| |||||||| | || || || || || ||||| ||||| || ||| | Sbjct 137431 CCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTATCAATGGCGTTAAACAGGTAGCTGCG 137490 Query 42316 ttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTT 42375 | || || | || || || |||| || || | || || || ||||| Sbjct 137491 CTGGGCGGGCTCCTTGATGTACGTGTCAATCAGCAGCGAGTATGTCTCGGAGTGGATGTT 137550 Query 42376 TTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACA 42435 || || |||||||| |||||||| || | |||||||| | ||| || || | Sbjct 137551 CTCCATCATGATCTGAAAGCCGTAGAAGCAGCGGGCCTCGGGGATCTGGACCTCGCCCGA 137610 Query 42436 AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 42495 || || || | | || ||||| || || ||||| || ||||| || |||| || Sbjct 137611 GAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGACGCGGCAAAGAAGGCCAGCAC 137670 Query 42496 ATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT----TTATTCCAATCATTGATATCTT 42551 || || || || ||||||||| |||| || || ||||| || | | || | Sbjct 137671 GTGCGAGATGAAGTACTTTTCGTCC-TTGTTCATGCGGTTGTTCCAGTCGTGCAGGTCCT 137729 Query 42552 TAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCC 42611 | || | || | || || | ||||| || || || || |||||||| ||||| | || Sbjct 137730 TGGACAGGTCAATCTCCTCGGCAGTCCAGAAGGACGCCTCGGCCTTTTTGTACATTTGCC 137789 Query 42612 AGAT 42615 |||| Sbjct 137790 AGAT 137793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671119778909400