Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1092 255 9e-63 seq1750 154 2e-32 >seq1092 Length=189081 Score = 255 bits (282), Expect = 9e-63 Identities = 584/867 (67%), Gaps = 33/867 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||||||||| |||| ||||| ||||| | ||| ||| | || ||| Sbjct 137793 ATCTGGCAAATGTACAAAAAGGCCGAGGCGTCCTTCTGGACTGCCGAGGAGATTGACCTG 137734 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG---TTTATA 125135 |||||||||||| |||| ||| | | || ||| | | || | || || || Sbjct 137733 TCCAAGGACCTGCACGACTGGAACAACCGCATGA---ACAAGGACGAAAAGTACTTCATC 137677 Query 125136 TCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACA 125195 |||||| | ||||||||||||||| || || || || |||||||| || ||| | Sbjct 137676 TCGCACGTGCTGGCCTTCTTTGCCGCGTCGGACGGCATTGTCAACGAGAACCTGGTCGAG 137617 Query 125196 CGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255 || ||||| ||| | || || |||| ||||| ||||| || || |||||| Sbjct 137616 CGCTTCTCGGGCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTTCAGATCATG 137557 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC-- 125313 || |||||| | ||||| || | ||||| |||||||||| |||||| || | Sbjct 137556 ATGGAGAACATCCACTCCGAGACATACTCGCTGCTGATTGACACGTACATCAAGGAGCCC 137497 Query 125314 -CGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAG 125372 | || || | || || |||||||| || || || | || | || || ||| Sbjct 137496 GCCCAGCGCAGCTAC---CTGTTTAACGCCATTGATACTATTCCCTGCATCCGCCGCAAG 137440 Query 125373 GCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTG 125432 || | |||| | |||||| | ||| || |||| | | ||| | | |||||| Sbjct 137439 GCCGACTGGGCCCTCAAGTGGATTGCCGACCACGAGTCGACCTTTGCCCAACGTCTGGTG 137380 Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || || |||||||| || ||||||||||| ||||| ||||| ||||||||||||| Sbjct 137379 GCCTTTGCCGCCGTCGAAGGCATCTTCTTCTCGGGCGCCTTTGCTTCCATCTTTTGGCTG 137320 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 |||||||| ||||||||||| ||||| |||||| | || || || |||||| Sbjct 137319 CGCAAGCGCGGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTGATTTCCCGCGACGAG 137260 Query 125553 GGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCTGCGTCCCGAGTGCA 125610 ||||| ||| ||||||||| || || || ||||| || | | | ||| || | Sbjct 137259 GGCCTGCACACAGACTTTGCCTGCCTGCTCTTCTCGCACCTCAACAACCGCCCCAG-CAA 137201 Query 125611 GATCCAGC-GATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAG 125669 || ||| ||| ||| |||| | ||||| || || || ||| | ||| Sbjct 137200 GA---AGCTGAT--TGAGGAAATCA------TCACCGACGCTGTCGCCATTGAAAAGGAG 137152 Query 125670 TTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAG 125729 || | ||||| |||| || | || | ||||||||| | | || ||| || Sbjct 137151 TTCTTGACCGACGCCCTGCCCTGCGCTCTGCTCGGCATGAACGCCGACCTGATGAAGCAG 137092 Query 125730 TACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTAC 125786 ||||| |||||||| || || ||||| ||| || | ||| || ||| | ||| Sbjct 137091 TACATTGAGTTTGTTGCCGACCGTCTGCTGGTCG---CCCTCGGCAACGAAAAGGTCTAC 137035 Query 125787 AACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTT 125846 | ||| || |||||||| |||||| | ||| || || | || ||||||||||| Sbjct 137034 CGCTCCACCAACCCCTTTGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACCAACTTC 136975 Query 125847 TTCGAGAAGAAGGTCAGCGAGTACAAA 125873 ||||||||| ||| |||| ||| || Sbjct 136974 TTCGAGAAGCGTGTCGGCGACTACCAA 136948 >seq1750 Length=138661 Score = 154 bits (170), Expect = 2e-32 Identities = 305/446 (68%), Gaps = 4/446 (1%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||||||||| || || || || ||| | ||| | ||| |||| || |||||||| || Sbjct 35434 CAGGGCGGCAACAAGCGCCCTGGTGCTTTTGCCATTTACCTGGAGCCGTGGCACGCCGAT 35493 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || | || ||||||| || ||| || |||| || ||| | ||| Sbjct 35494 GTGTTTGAGTTCCTTGACCTGCGCAAGAATCATGGTAAGGAGGAGGTCCGCGCCCGTGAC 35553 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 |||| || || ||| | || || ||||||||||||| ||| | | | || Sbjct 35554 CTGTTCCTAGCTCTGTGGATTCCCGACATGTTCATGAAGCGTGTCGAGAAGAACGAGAAC 35613 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| ||| ||||| ||| || || || || ||| | || |||| ||||| || ||| Sbjct 35614 TGGACCCTGATGTGTCCCAACGAGTGCCCTGGCCTGGCTGACTGCTACGGCGAGGAATTT 35673 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCACG 97174 ||||| |||| |||||| | |||||||| || || || ||| | || | Sbjct 35674 GAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCCGTGGTCGGCAGTCG-GTCAAGGC-CC 35731 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| |||||| | ||||| || ||| ||| |||||||| | |||| || || | Sbjct 35732 AGAAGCTGTGGTATGCCATTTTGGAGGCCCAGACCGAGACTGGCAACCCGTTTATGCTGT 35791 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 ||||||| | || ||||| ||||||||| | |||| ||||| |||||| Sbjct 35792 ACAAGGACCACTGCAACCGCAAGAGCAACCAAAAGAATCTGGGTACCATTCGCAGCTCCA 35851 Query 97294 ATCTGTGCACGGAAATTGTAGAGTAC 97319 | |||||||| || ||| | |||||| Sbjct 35852 ACCTGTGCACTGAGATTATCGAGTAC 35877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741037755599400