Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2283 116 9e-21 seq335 107 4e-18 >seq2283 Length=86879 Score = 116 bits (128), Expect = 9e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || |||||||| || || || | ||||| || || || |||||| Sbjct 40568 GTGGACTCCTTCTGGATGTTATAGTCGGACAGGGTACGGCCGTCCTCCAGCTGCTTTCCA 40509 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || || || || || || || ||||| ||||||| || Sbjct 40508 GCAAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTTGACTTG 40449 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| || ||| ||||| || || |||||||| || || | ||| Sbjct 40448 ACATTGTCGATGGTGTCGGAAGATTCCACCTCAAGGGTGATAGTCTTGCCCGTCACTGTA 40389 Query 104543 TTTA 104546 |||| Sbjct 40388 TTTA 40385 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || |||||||| || || | ||||| || || || |||||| Sbjct 40852 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTCCTCCAGCTGCTTTCCA 40793 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || ||||| || || || |||||||| ||||| | || Sbjct 40792 GCAAAGATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTATCCTGGATCTTGGACTTG 40733 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| | || || || || || || ||||| || || || || Sbjct 40732 ACGTTGTCAATGGTATCCGACGACTCGACTTCGAGAGTGATGGTCTTGCCGGTGAGGGTC 40673 Query 104543 TTTACAAATAT 104553 || || | ||| Sbjct 40672 TTGACGACTAT 40662 >seq335 Length=221524 Score = 107 bits (118), Expect = 4e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 ||||| || || |||||||| ||||| | || || || || || || ||||| || || Sbjct 117051 TTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 117110 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 || | ||| || || || || || || || || ||||||||||| | || ||||| || Sbjct 117111 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 117170 Query 104492 ACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 | || || | ||| || ||||| || ||||| |||||||| || || || || || || Sbjct 117171 ATAGTGTC-CGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAA 117229 Query 104551 TATCTGCATTTTG 104563 |||||||| ||| Sbjct 117230 AATCTGCATCTTG 117242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151364248444020