Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1790 131 1e-25 seq1972 86.0 4e-12 >seq1790 Length=4252 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||| |||||||||| || |||||||| Sbjct 4194 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGGTAGATAGGGACAGTGGGAATCTCGT 4135 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 4134 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 4100 >seq1972 Length=108299 Score = 86.0 bits (94), Expect = 4e-12 Identities = 191/287 (67%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 6200 GTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTAT 6259 ||||||||| ||||| ||||| ||| | ||||| |||| || ||||| || ||||| Sbjct 48595 GTTCTACCGGTACAAGATGCCCCGCCTTCAAACCAAGATCGAAGGCAAGGGTAATGGTAT 48654 Query 6260 TAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTA 6319 || || ||| | |||||| || | | ||||| || | || | || || | | | Sbjct 48655 CAAGACTGTCGTGGTCAACCTGTCGGCCGTCGCCCAGTCTCTGGCTCGTCCCGGTGCTCA 48714 Query 6320 CCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGA 6379 || || || || || || | ||| ||||| || ||||| | |||| | | | || Sbjct 48715 CCTGATCAAGTACTTTGGTTTCGAGCTTGGAGCCCAGACCAACATTGACCCCCCGGATGA 48774 Query 6380 GCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTT 6439 |||| ||| | ||||| ||||| | | |||||||||||| | |||| || Sbjct 48775 CCGCTGGATCATCAACGGTTCGCACGATACCAAGAAGCTGCAGGACCACGTCTACGGTTT 48834 Query 6440 TATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486 ||| |||||| || || || | | ||| | ||||| || |||| Sbjct 48835 CATTGTCAAGTTCGTTCTTTGCAAGAAGTGCAAGAACCCCGAAACCG 48881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334937749778765