Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2283 113 4e-20 seq335 105 6e-18 seq1473 95.1 1e-14 seq1750 84.2 2e-11 >seq2283 Length=86879 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | ||||| || || ||||||| ||||| || | | Sbjct 40884 ATGCAAATCTTCGTCAAGACTCTTACCGGCAAGACCATCACTCTCGAAGTCGAGTCGTCG 40943 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| || || || ||||||||||||||||| || || || Sbjct 40944 GATACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAG 41003 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | |||||| ||| ||| | || || |||||| Sbjct 41004 CAGCGTCTGATTTTCGCGGGTAAGCAGCTGGAGGATGGCCGTACCCTGTCTGACTACAAC 41063 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 41064 ATCCAGAAGGAGTCTAC 41080 Score = 109 bits (120), Expect = 5e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| ||||| |||||| | |||| ||| | ||| || |||| | Sbjct 40396 ACGGGCAAGACTATCACCCTTGAGGTGGAATCTTCCGACACCATCGACAATGTCAAGTCA 40455 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||||||||| || || || || ||||| || ||||| || || Sbjct 40456 AAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGTCTGATCTTTGCTGGAAAG 40515 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | ||||| ||| ||| | ||||| || ||||| || || || ||||| Sbjct 40516 CAGCTGGAGGACGGCCGTACCCTGTCCGACTATAACATCCAGAAGGAGTCCAC 40568 >seq335 Length=221524 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || || || | || ||||| ||| | || || || || || || Sbjct 117241 AAGATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 117182 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | ||| || |||| || ||||| ||||||||||| ||||| || || Sbjct 117181 TCGGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGAC 117122 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || || ||||| ||| | |||||| |||||| | || || ||| Sbjct 117121 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCTGACTAC 117062 Query 22396 AACATTCAAAA 22406 ||||| || || Sbjct 117061 AACATCCAGAA 117051 >seq1473 Length=183801 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || ||||| || | || || || || || || | || || | Sbjct 105215 TTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGACACGAT 105156 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| | |||| || || || ||||||||||| ||||| || || || || ||||| Sbjct 105155 CGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCT 105096 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || ||||| ||||| ||| | |||||| ||||||| | ||||| ||||||||||| || Sbjct 105095 GATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAA 105036 >seq1750 Length=138661 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 129133 ACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAAC 129192 || || || ||||| || | || || || |||||||||| ||| |||||||||| Sbjct 36482 ACCTGGAACTCACCGGCAAGCACACGACGCTGGTAAATGTTGGAAGTGTACGGCTCAAAG 36423 Query 129193 GATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCA-AAG 129251 | ||||||||||| | || || | ||| | || || |||||| ||||| ||| || Sbjct 36422 CACTCATTGTTGCCCAGAATCTGCGACGTGCTGGCCGTAGGCATGGGAGCCA-GCAGCAG 36364 Query 129252 CGAGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGA 129311 |||||| |||| ||||||||| || || | | || | | ||||||||| | Sbjct 36363 CGAGTTGCGCACACCGTGCTGCTTGATCTGCTCCTTGAGCGAAGCCCAGTCCCAGAGGTC 36304 Query 129312 TGTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCC 129351 |||| ||| |||||||| ||| | |||| || ||| Sbjct 36303 ACTGGGAGTGACATTCCACATGTCAAACTGCAGGATGCCC 36264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419716157767975