Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04-
03] 2,315 sequences; 28,117,660 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq2283 113 4e-20
seq335 105 6e-18
seq1473 95.1 1e-14
seq1750 84.2 2e-11
>seq2283
Length=86879
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || ||| | ||||| || || ||||||| ||||| || | |
Sbjct 40884 ATGCAAATCTTCGTCAAGACTCTTACCGGCAAGACCATCACTCTCGAAGTCGAGTCGTCG 40943
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | ||| | |||| || || || ||||||||||||||||| || || ||
Sbjct 40944 GATACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAG 41003
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || || || || || ||| | |||||| ||| ||| | || || ||||||
Sbjct 41004 CAGCGTCTGATTTTCGCGGGTAAGCAGCTGGAGGATGGCCGTACCCTGTCTGACTACAAC 41063
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || || || ||
Sbjct 41064 ATCCAGAAGGAGTCTAC 41080
Score = 109 bits (120), Expect = 5e-19
Identities = 128/173 (74%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || || |||| ||||| |||||| | |||| ||| | ||| || |||| |
Sbjct 40396 ACGGGCAAGACTATCACCCTTGAGGTGGAATCTTCCGACACCATCGACAATGTCAAGTCA 40455
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||||||||| || || || || ||||| || ||||| || ||
Sbjct 40456 AAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGTCTGATCTTTGCTGGAAAG 40515
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415
||| | ||||| ||| ||| | ||||| || ||||| || || || |||||
Sbjct 40516 CAGCTGGAGGACGGCCGTACCCTGTCCGACTATAACATCCAGAAGGAGTCCAC 40568
>seq335
Length=221524
Score = 105 bits (116), Expect = 6e-18
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|||||||| ||||| || || || | || ||||| ||| | || || || || || ||
Sbjct 117241 AAGATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 117182
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| || || | ||| || |||| || ||||| ||||||||||| ||||| || ||
Sbjct 117181 TCGGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGAC 117122
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| || ||||| || || || ||||| ||| | |||||| |||||| | || || |||
Sbjct 117121 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCTGACTAC 117062
Query 22396 AACATTCAAAA 22406
||||| || ||
Sbjct 117061 AACATCCAGAA 117051
>seq1473
Length=183801
Score = 95.1 bits (104), Expect = 1e-14
Identities = 129/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286
||| || || || | || ||||| || | || || || || || || | || || |
Sbjct 105215 TTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGACACGAT 105156
Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346
||| | |||| || || || ||||||||||| ||||| || || || || |||||
Sbjct 105155 CGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCT 105096
Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
|| ||||| ||||| ||| | |||||| ||||||| | ||||| ||||||||||| ||
Sbjct 105095 GATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAA 105036
>seq1750
Length=138661
Score = 84.2 bits (92), Expect = 2e-11
Identities = 152/220 (69%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 129133 ACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAAC 129192
|| || || ||||| || | || || || |||||||||| ||| ||||||||||
Sbjct 36482 ACCTGGAACTCACCGGCAAGCACACGACGCTGGTAAATGTTGGAAGTGTACGGCTCAAAG 36423
Query 129193 GATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCA-AAG 129251
| ||||||||||| | || || | ||| | || || |||||| ||||| ||| ||
Sbjct 36422 CACTCATTGTTGCCCAGAATCTGCGACGTGCTGGCCGTAGGCATGGGAGCCA-GCAGCAG 36364
Query 129252 CGAGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGA 129311
|||||| |||| ||||||||| || || | | || | | ||||||||| |
Sbjct 36363 CGAGTTGCGCACACCGTGCTGCTTGATCTGCTCCTTGAGCGAAGCCCAGTCCCAGAGGTC 36304
Query 129312 TGTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCC 129351
|||| ||| |||||||| ||| | |||| || |||
Sbjct 36303 ACTGGGAGTGACATTCCACATGTCAAACTGCAGGATGCCC 36264
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419716157767975
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |