Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1750 159 7e-34 seq677 105 1e-17 seq907 89.7 1e-12 >seq1750 Length=138661 Score = 159 bits (176), Expect = 7e-34 Identities = 456/695 (66%), Gaps = 7/695 (1%) Strand=Plus/Minus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||||| ||| |||| |||||||||||| || ||||| | | | ||| || | || Sbjct 36693 CTGCGACTGGTCGATAAAGGCACCACGGTCGGCAGCCATCTGCACCACCGTGCGCTGCGA 36634 Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234 ||||||||| ||||||||||| ||||||| || |||||| || ||||| Sbjct 36633 AATCTCCCACACTGTCTTGTACAGAGCCTTGATGTCGTCGGGAATGCTGGGAATGTTCTG 36574 Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGAG 293293 ||||| || | ||||||||| |||||||||| | || ||||| || |||| | Sbjct 36573 AATAGAACCGTTCTCGGCAATAATGCGGTTCTTCATGTTATCAGACCACAGACCCA-GGT 36515 Query 293294 CAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGAC 293353 ||| || || || | || | | ||| ||||| |||||||||| || || |||| Sbjct 36514 CAACCAGGTCACGCAGCAGCCACGGGTTCACAACCTGGAACTCACCGGCAAGCACACGAC 36455 Query 293354 GGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAG 293413 | ||||||||| |||||| || || |||| || |||||| | | Sbjct 36454 GCTGGTAAATGTTGGAAGTGTACGGCTCAAAGCACTCATTGTTGCCCAGAATCTGCGACG 36395 Query 293414 TAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACC---CTTCTTGACAC 293470 | || |||||||| |||| | ||| ||||| | |||||| || ||||| Sbjct 36394 TGCTGGCCGTAGGCATGGGAGCCAGCAGCAGCGAGTTGCGCACACCGTGCTGCTTGATCT 36335 Query 293471 GCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTGAGGTGTAACACCCCAGAGATGATAC 293529 || | ||| ||||||| |||||| ||| || || ||| ||| | | | || Sbjct 36334 GCTCCTTGAGCGAAGCCCAGTCCCAGAGGTCACTG-GGAGTGACATTCCACATGTCAAAC 36276 Query 293530 TGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCATCA 293589 |||| ||| |||| |||| || ||||| |||| | | | ||| | ||| | Sbjct 36275 TGCAGGATGCCCTGCGAAACAGGCGAACCCTCGTAGGTCGAGTACGTGCCCTCCTCCTTG 36216 Query 293590 GAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGTTG 293649 | | ||| || ||| | ||||| |||||| ||| ||||||| | |||| Sbjct 36215 GCAATCTCCATGGACGCCGTCAGGGCAGCGTGGTAAATAGTCTCAAAGATCTGAGTGTTG 36156 Query 293650 AGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGCAGA 293709 ||||||||||||| | || ||||||||||| || || || |||| |||| Sbjct 36155 AGCTTGCGAGCCTCGGCCGACTCAAACGGCATACGTAGAGCCAAAAAGGCATCAGCCAGA 36096 Query 293710 CCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGAACC 293769 ||||| ||||| || |||| || || | ||| ||||||| | | ||||||||| || Sbjct 36095 CCCTGGACACCAACGCCAATAGGACGGTGGCGCATGTTGCTGTTGTGTGCCTCGGGCACA 36036 Query 293770 GCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804 | || | ||||||||| | | || ||| || Sbjct 36035 GGGTAGTGATTGACATCAATGATGCGGTTCAGATT 36001 >seq677 Length=56570 Score = 105 bits (116), Expect = 1e-17 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| ||||| |||| ||||| || || || |||| ||||||||||| ||| Sbjct 2934 GGTGAGGACCTGTGCAACTGCACCTTCTCTCTTGCCTACGGTGCCAAGATTCTGCTTAAC 2993 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| || | ||||||||| | || || ||||| ||||||||| || || Sbjct 2994 CAGACCCATCTGCGTCTGAAGCGTGGCCAGCGCTACGGTCTGTGCGGTCCCAACGGTTCG 3053 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| || || ||||||||||| |||| ||| | | ||| ||||| | ||| Sbjct 3054 GGCAAGTCGACGCTGATGCGCGCCATCAACAACGAGCAGGTTG-AGGGTTTCCCCAAGCA 3112 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || ||||| | ||| || | ||| ||||||||| | ||||| Sbjct 3113 GTCCGAGGTCAAGACTGTCTTTGTCGAGCACGACCTGGACTC 3154 Score = 104 bits (114), Expect = 5e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220 || || |||| |||||||| ||||| ||||| || ||||| || || ||||| || ||| Sbjct 3750 TCGCGTATTGCCGTCATTGGTCCCAACGGTGCTGGCAAGTCGACTCTGATCAACGTGCTG 3809 Query 280221 ACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCT 280280 ||||| ||| |||||| || ||| |||| ||||| || || || Sbjct 3810 ACTGGTGAGCTGATTCCCACTGCCGGTGAGATTTACCAGCACGAGAACATTCGTATCGCG 3869 Query 280281 TACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAA 280340 ||| || |||||||||||| |||||||| |||||||||||| ||||| | Sbjct 3870 TACATCAAGCAGCACGCTTTCGCTCACATCGATAACCACCTGGACTCTACTCCCTCGGAG 3929 Query 280341 TACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 |||||||||||||| | | || | ||| |||||| ||| || |||| || Sbjct 3930 TACATTCAGTGGCG-TTTCCAGACTGGTGAGGATCGCGAGACGATGGACCG 3979 >seq907 Length=50168 Score = 89.7 bits (98), Expect = 1e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 279692 GCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCT 279751 ||| || || || ||||||||||| ||||||||||||||||| || | || || || || Sbjct 35866 GCCGGTCGGCTCGCTGTCGGGTGGATGGAAGATGAAGCTGGCGCTGGCACGTGCTATGCT 35807 Query 279752 ACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGAC 279800 | |||||||| || ||||| |||||||| |||||||| ||||| Sbjct 35806 GCAAAAGGCCGATGTGCTGCTGCTGGATGAGCCGACCAACCATTTGGAC 35758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027806313396915