Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04-
03] 2,315 sequences; 28,117,660 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq1750 159 7e-34
seq677 105 1e-17
seq907 89.7 1e-12
>seq1750
Length=138661
Score = 159 bits (176), Expect = 7e-34
Identities = 456/695 (66%), Gaps = 7/695 (1%)
Strand=Plus/Minus
Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174
||||| ||| |||| |||||||||||| || ||||| | | | ||| || | ||
Sbjct 36693 CTGCGACTGGTCGATAAAGGCACCACGGTCGGCAGCCATCTGCACCACCGTGCGCTGCGA 36634
Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234
||||||||| ||||||||||| ||||||| || |||||| || |||||
Sbjct 36633 AATCTCCCACACTGTCTTGTACAGAGCCTTGATGTCGTCGGGAATGCTGGGAATGTTCTG 36574
Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGAG 293293
||||| || | ||||||||| |||||||||| | || ||||| || |||| |
Sbjct 36573 AATAGAACCGTTCTCGGCAATAATGCGGTTCTTCATGTTATCAGACCACAGACCCA-GGT 36515
Query 293294 CAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGAC 293353
||| || || || | || | | ||| ||||| |||||||||| || || ||||
Sbjct 36514 CAACCAGGTCACGCAGCAGCCACGGGTTCACAACCTGGAACTCACCGGCAAGCACACGAC 36455
Query 293354 GGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAG 293413
| ||||||||| |||||| || || |||| || |||||| | |
Sbjct 36454 GCTGGTAAATGTTGGAAGTGTACGGCTCAAAGCACTCATTGTTGCCCAGAATCTGCGACG 36395
Query 293414 TAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACC---CTTCTTGACAC 293470
| || |||||||| |||| | ||| ||||| | |||||| || |||||
Sbjct 36394 TGCTGGCCGTAGGCATGGGAGCCAGCAGCAGCGAGTTGCGCACACCGTGCTGCTTGATCT 36335
Query 293471 GCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTGAGGTGTAACACCCCAGAGATGATAC 293529
|| | ||| ||||||| |||||| ||| || || ||| ||| | | | ||
Sbjct 36334 GCTCCTTGAGCGAAGCCCAGTCCCAGAGGTCACTG-GGAGTGACATTCCACATGTCAAAC 36276
Query 293530 TGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCATCA 293589
|||| ||| |||| |||| || ||||| |||| | | | ||| | ||| |
Sbjct 36275 TGCAGGATGCCCTGCGAAACAGGCGAACCCTCGTAGGTCGAGTACGTGCCCTCCTCCTTG 36216
Query 293590 GAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGTTG 293649
| | ||| || ||| | ||||| |||||| ||| ||||||| | ||||
Sbjct 36215 GCAATCTCCATGGACGCCGTCAGGGCAGCGTGGTAAATAGTCTCAAAGATCTGAGTGTTG 36156
Query 293650 AGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGCAGA 293709
||||||||||||| | || ||||||||||| || || || |||| ||||
Sbjct 36155 AGCTTGCGAGCCTCGGCCGACTCAAACGGCATACGTAGAGCCAAAAAGGCATCAGCCAGA 36096
Query 293710 CCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGAACC 293769
||||| ||||| || |||| || || | ||| ||||||| | | ||||||||| ||
Sbjct 36095 CCCTGGACACCAACGCCAATAGGACGGTGGCGCATGTTGCTGTTGTGTGCCTCGGGCACA 36036
Query 293770 GCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804
| || | ||||||||| | | || ||| ||
Sbjct 36035 GGGTAGTGATTGACATCAATGATGCGGTTCAGATT 36001
>seq677
Length=56570
Score = 105 bits (116), Expect = 1e-17
Identities = 158/222 (71%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|||||||| ||||| |||| ||||| || || || |||| ||||||||||| |||
Sbjct 2934 GGTGAGGACCTGTGCAACTGCACCTTCTCTCTTGCCTACGGTGCCAAGATTCTGCTTAAC 2993
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|||| || | ||||||||| | || || ||||| ||||||||| || ||
Sbjct 2994 CAGACCCATCTGCGTCTGAAGCGTGGCCAGCGCTACGGTCTGTGCGGTCCCAACGGTTCG 3053
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| || || ||||||||||| |||| ||| | | ||| ||||| | |||
Sbjct 3054 GGCAAGTCGACGCTGATGCGCGCCATCAACAACGAGCAGGTTG-AGGGTTTCCCCAAGCA 3112
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
|| ||||| | ||| || | ||| ||||||||| | |||||
Sbjct 3113 GTCCGAGGTCAAGACTGTCTTTGTCGAGCACGACCTGGACTC 3154
Score = 104 bits (114), Expect = 5e-17
Identities = 163/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220
|| || |||| |||||||| ||||| ||||| || ||||| || || ||||| || |||
Sbjct 3750 TCGCGTATTGCCGTCATTGGTCCCAACGGTGCTGGCAAGTCGACTCTGATCAACGTGCTG 3809
Query 280221 ACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCT 280280
||||| ||| |||||| || ||| |||| ||||| || || ||
Sbjct 3810 ACTGGTGAGCTGATTCCCACTGCCGGTGAGATTTACCAGCACGAGAACATTCGTATCGCG 3869
Query 280281 TACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAA 280340
||| || |||||||||||| |||||||| |||||||||||| ||||| |
Sbjct 3870 TACATCAAGCAGCACGCTTTCGCTCACATCGATAACCACCTGGACTCTACTCCCTCGGAG 3929
Query 280341 TACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390
|||||||||||||| | | || | ||| |||||| ||| || |||| ||
Sbjct 3930 TACATTCAGTGGCG-TTTCCAGACTGGTGAGGATCGCGAGACGATGGACCG 3979
>seq907
Length=50168
Score = 89.7 bits (98), Expect = 1e-12
Identities = 85/109 (78%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 279692 GCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCT 279751
||| || || || ||||||||||| ||||||||||||||||| || | || || || ||
Sbjct 35866 GCCGGTCGGCTCGCTGTCGGGTGGATGGAAGATGAAGCTGGCGCTGGCACGTGCTATGCT 35807
Query 279752 ACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGAC 279800
| |||||||| || ||||| |||||||| |||||||| |||||
Sbjct 35806 GCAAAAGGCCGATGTGCTGCTGCTGGATGAGCCGACCAACCATTTGGAC 35758
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027806313396915
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |