Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2283 114 3e-20 seq335 102 2e-16 seq1092 100 7e-16 >seq2283 Length=86879 Score = 114 bits (126), Expect = 3e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || |||| || || || ||||| || ||||| | Sbjct 40882 CCACCACGAAGGCGGAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 40823 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || ||||| || |||||||||||||| || || Sbjct 40822 AGGGTACGGCCGTCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCCGGAGGA 40763 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| || | || ||||| || || | ||| ||| || ||| Sbjct 40762 ATGCCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCGACT 40703 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATAT 288467 ||||| ||||| ||||| ||||| || |||||||||| ||| Sbjct 40702 TCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGACTAT 40662 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || |||| || || || ||||| || ||||| | Sbjct 41110 CCACCACGAAGGCGGAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 41051 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || ||||| ||||||||||| || || ||| Sbjct 41050 AGGGTACGGCCATCCTCCAGCTGCTTACCCGCGAAAATCAGACGCTGCTGG---TCCGGG 40994 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || | || ||||| || || | ||| ||| || Sbjct 40993 GGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCG 40934 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| ||||| ||||| ||||| |||||||||||||| || ||||| Sbjct 40933 ACTTCGAGAGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 40884 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || || || || || || | || || || ||||| Sbjct 41302 TCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCCAGCTGCTTACCCGCGAAA 41243 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||| || || || || || ||||||||||| |||| ||||| || Sbjct 41242 ATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTATCCTGGATCTTCGACTTCACATTG 41183 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | |||| ||||| || || || ||||| ||||| ||||| |||||||||||| Sbjct 41182 TCGATGGTATCGGAGGATTCCACCTCAAGAGTGATTGTCTTGCCGGTAAGAGTCTTGACG 41123 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 41122 AAGATTTGCAT 41112 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/208 (70%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || || | ||| || || ||||| |||||||||| Sbjct 40598 CCACCACGAAGGCGGAGAACCAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCGGAC 40539 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || ||||| || |||||||||||||| || || ||| Sbjct 40538 AGGGTACGGCCGTCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTG---GTCCGGG 40482 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || | || || || || || | ||| ||||| Sbjct 40481 GGAATACCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTGTCGGAAGATTCC 40422 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCA 288451 || || || ||||| ||||| || |||| Sbjct 40421 ACCTCAAGGGTGATAGTCTTGCCCGTCA 40394 >seq335 Length=221524 Score = 102 bits (112), Expect = 2e-16 Identities = 138/191 (72%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | || ||||| || || || | || || || ||||||||| Sbjct 117051 TTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 117110 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||||||| || || ||| || || || || ||||| || || | || || || Sbjct 117111 AGACGCTGCTG---GTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTG 117167 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || || || || ||||| || |||||||| || ||||| ||||||||| Sbjct 117168 TCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACG 117227 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 117228 AAAATCTGCAT 117238 >seq1092 Length=189081 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 269113 GAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTC 269172 ||||| |||||| | ||||| | || || || || |||| ||||| ||||| || Sbjct 137160 GAAAAGGAGTTCTTGACCGACGCCCTGCCCTGCGCTCTGCTCGGCATGAACGCCGACCTG 137101 Query 269173 ATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAA 269232 ||||| || || || || || || || || ||| | | || ||||| | || || Sbjct 137100 ATGAAGCAGTACATTGAGTTTGTTGCCGACCGTCTGCTGGTCGCCCTCGGCAACGAAAAG 137041 Query 269233 GTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACG 269292 || ||| || | || ||||| | ||| ||||| || ||||||| || ||||| Sbjct 137040 GTCTACCGCTCCACCAACCCCTTTGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACC 136981 Query 269293 AACTTCTTCGAAAAGCGTGTCAGCGACTATCAA 269325 ||||||||||| ||||||||| ||||||| ||| Sbjct 136980 AACTTCTTCGAGAAGCGTGTCGGCGACTACCAA 136948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179619410344570