Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1092 123 5e-23 seq677 98.7 2e-15 >seq1092 Length=189081 Score = 123 bits (136), Expect = 5e-23 Identities = 302/454 (67%), Gaps = 8/454 (2%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 ||||| | ||||| || |||| | ||| ||||| || | || || ||| | | Sbjct 137397 TTTGCCCAACGTCTGGTGGCCTTTGCCGCCGTCGAAGGCATCTTCTTCTC-GGGCGCCTT 137339 Query 243349 TGCG-CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGA 243407 ||| |||||||||||||||| || ||| | ||||| ||||| | || ||||| Sbjct 137338 TGCTTCCATCTTTTGGCTGCGCAAGCGCGGTCTCATGCCCGGCCTGACCTTTTCCAACGA 137279 Query 243408 GTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCT 243467 | | || |||||||||||||| ||| | | || | || | | || | || Sbjct 137278 GCTGATTTCCCGCGACGAGGGCCTGCACACAGACTTTGCCTGCCTGCTCTTCTCGCACCT 137219 Query 243468 CCAGAACAAGCTACCATTCGAAACGGTCA---AACAAATCATCACAGAAGCAGTTGAAAA 243524 | ||||| | || | | | | | | | |||||||||| || || || | | Sbjct 137218 C---AACAACCGCCCCAGCAAGAAGCTGATTGAGGAAATCATCACCGACGCTGTCGCCAT 137162 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 |||||||| ||| | |||||| | || ||| || | ||||||||| | || || Sbjct 137161 TGAAAAGGAGTTCTTGACCGACGCCCTGCCCTGCGCTCTGCTCGGCATGAACGCCGACCT 137102 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 ||| |||||||| || || || |||||||| | | |||| || || | || || Sbjct 137101 GATGAAGCAGTACATTGAGTTTGTTGCCGACCGTCTGCTGGTCGCCCTCGGCAACGAAAA 137042 Query 243645 AGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAAC 243704 || ||| ||||| |||||||||| ||| |||||| ||| ||||| || || || Sbjct 137041 GGTCTACCGCTCCACCAACCCCTTTGACTTCATGGAGAACATCTCGCTCGGCGGCAAGAC 136982 Query 243705 TAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 ||||||||||| ||||||||| | || || ||| Sbjct 136981 CAACTTCTTCGAGAAGCGTGTCGGCGACTACCAA 136948 >seq677 Length=56570 Score = 98.7 bits (108), Expect = 2e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || |||| ||| |||| || ||||||||||| || || || |||| || Sbjct 3107 GGGGAAACCCTCAACCTGCTCGTTGTTGATGGCGCGCATCAGCGTCGACTTGCCCGAACC 3048 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || || |||||||||||||| | |||||||||||| | | || | ||| || Sbjct 3047 GTTGGGACCGCACAGACCGTAGCGCTGGCCACGCTTCAGACGCAGATGGGTCTGGTTAAG 2988 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 ||||| || |||| || || ||||| || || | ||||| |||||||| Sbjct 2987 CAGAATCTTGGCACCGTAGGCAAGAGAGAAGGTGCAGTTGCACAGGTCCTCACC 2934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102847287545250