Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1750 165 8e-36 seq1092 165 8e-36 seq2283 100 3e-16 seq335 93.3 4e-14 >seq1750 Length=138661 Score = 165 bits (182), Expect = 8e-36 Identities = 508/779 (65%), Gaps = 29/779 (4%) Strand=Plus/Minus Query 153388 ACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGTC 153447 ||||||| || || || |||||| || ||||||||||||| ||| ||||| || || | Sbjct 36130 ACGGCATACGTAGAGCCAAAAAGGCATCAGCCAGACCCTGGACACCAACGCCAATAGGAC 36071 Query 153448 GATGCTTCTCGTTGCTGC-----GCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGAT 153502 | || | ||||||| |||||| || | || ||||||||| ||| || Sbjct 36070 GGTGGCGCATGTTGCTGTTGTGTGCCTCGGGCACA-----GGGTAGTGATTGACATCAAT 36016 Query 153503 AATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATA 153562 || ||| || |||||||||||||| || || | | | || |||| ||| || || Sbjct 36015 GATGCGGTTCAGATTGCGCACCACCACCTTGGTGACATCGTGCAGCTTCTGGAAGTCGTA 35956 Query 153563 GGTCATTTCGTCGACGCGTACGCATCGATT-CACGGCAATAGACGCCAGATTACAGACGG 153621 | | ||| | | || | |||| || || | || ||||| || || || | Sbjct 35955 GCGGTTCTCGCTGTAGTCAACAAA-CGATGGCAGCGCCAGCGAGGCCAGGTTGCACACAG 35897 Query 153622 CCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGA 153681 | ||| || | | | | ||||| | ||||| | ||| |||||| || ||| Sbjct 35896 CAACCTCATCAGGGGCACAGTACTCGATAATCTCAGTGCACAGGTTGGAGCTGCGAATGG 35837 Query 153682 CGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTC 153741 |||| ||| | || ||||| ||||| ||||| ||| ||| | ||||| |||| Sbjct 35836 TACCCAGATTCTTTTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATAAACGGGT 35777 Query 153742 CGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCC 153798 ||| |||||| || | || | || | ||| ||| | ||| || ||| Sbjct 35776 TGCCAGTCTCGGTCTGGGCCTCCAAAATGGCATACCA---CAGCTTCTGGGCCTTGACCG 35720 Query 153799 GCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGT 153858 ||||||| |||||||| ||||||| |||||||| |||||| || ||||||| Sbjct 35719 ACTGCCGACCACGGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCAAATTCCTCGCCGT 35660 Query 153859 AGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGT 153918 ||||||| || ||||| || |||| | ||||||||||| | ||| | |||| | Sbjct 35659 AGCAGTCAGCCAGGCCAGGGCACTCGTTGGGACACATCAGGGTCCAGTTCTCGTTCTTCT 35600 Query 153919 TGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGC 153978 ||| || |||||||| || || | ||| || || | ||||| || || | Sbjct 35599 CGACACGCTTCATGAACATGTCGGGAATCCACAGAGCTAGGAACAGGTCACGGGCGCGGA 35540 Query 153979 AATCCTCCGCGCCCATG----TTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGC 154034 |||||| ||||| ||||| ||| | || | | | | ||||||||| Sbjct 35539 CCTCCTCC-TTACCATGATTCTTGCG---CAGGTCAAGGAACTCAAACACATCGGCGTGC 35484 Query 154035 CAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGG 154091 || || || | ||| | ||| | ||||| ||| || |||||||| ||||| | | Sbjct 35483 CACGGCTCCAGGTAAATGGCAAAAGCACCAGGGCGCTTGTTGCCGCCCTGGTCGACATAG 35424 Query 154092 CGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGT 154150 || | | |||||||| ||||||| |||||| | |||| | | ||| |||||||| Sbjct 35423 CGGGCAGTGTTGTTGAACACGCGCAGCATGGGGATAATGCCGTTGGAGGTACCGTTGGT 35365 >seq1092 Length=189081 Score = 165 bits (182), Expect = 8e-36 Identities = 305/444 (69%), Gaps = 19/444 (4%) Strand=Plus/Minus Query 52402 TGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTT 52461 |||||||||| ||| ||||| ||| | || || || ||| |||||| ||||||||| Sbjct 137384 TGGTGGCCTTTGCCGCCGTCGAAGGCATCTTCTTCTCGGGCGCCTTTGCTTCCATCTTTT 137325 Query 52462 ACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCG 52521 | | | || | |||||||||||||| || ||||||| |||| || |||| Sbjct 137324 GGCTGCGCAAGCGCGGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTGATTTCCCGCG 137265 Query 52522 ACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAAT 52581 |||| || |||||||| |||||||| ||||| || | ||| ||| || | Sbjct 137264 ACGAGGGCCTGCACACAGACTTTGCCTGCCTGCTCTTCT-----CGC---ACCTCAACAA 137213 Query 52582 TGGATTCGGACACGATCCTGAGC------ATGTTCAAGGAGGCGGTGGCTATCGAAAAGG 52635 | | | || || |||| || ||| || || || || || ||||||| Sbjct 137212 CCGCCCCAG-CAAGAAGCTGATTGAGGAAATCATCACCGACGCTGTCGCCATTGAAAAGG 137154 Query 52636 AGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCG 52695 |||| || || | ||| ||||| || ||||| ||||||||||| | ||| Sbjct 137153 AGTTCTTGACCGACGCCCTGCCCTGCGCTCTGCTCGGCATGAACGCCGACCTGATGAAGC 137094 Query 52696 AGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCA 52755 ||||||| |||||||| || || |||||| |||| ||||| | |||| || | Sbjct 137093 AGTACATTGAGTTTGTTGCCGACCGTCTGCTGGTCGCCCTCGGCAACGAAAAGGTCTAC- 137035 Query 52756 ACGCTCG--CAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTT 52813 ||||| ||| || ||||| || ||| | ||||| ||||| | |||||||||||||| Sbjct 137034 -CGCTCCACCAACCCCTTTGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACCAACTT 136976 Query 52814 TTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||||| |||||||| || Sbjct 136975 CTTCGAGAAGCGTGTCGGCGACTA 136952 >seq2283 Length=86879 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| ||||| ||| | || | | | |||||||| || |||||||||||| Sbjct 41339 GCCGCCACGCAGACGCAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 41280 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| ||||| || || ||||| | | || || ||||| ||||||||||| Sbjct 41279 CAGGGTACGGCCATCCTCCAGCTGCTTACCCGCGAAAATCAGGCGCTGCTGGTCCGGAGG 41220 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || || || ||| || || | |||| || | ||| |||| || |||| Sbjct 41219 AATGCCCTCCTTATCCTGGATCTTCGACTTCACATTG-TCGATGGTATCGGAGGATTCCA 41161 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || ||||| || || || || ||||| Sbjct 41160 CCTCAAGAGTGATTGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 41112 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || ||||| ||||| || || ||||| | Sbjct 41077 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTACCCGCG 41018 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || |||||||| |||||||| || ||||| || ||||| ||| || || | Sbjct 41017 AAAATCAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACG 40958 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||| || | |||||| || |||| || | || || || || ||||| || Sbjct 40957 TTGTCAATGGTATCCGACGACTCGACTTCGAGAGTGATGGTCTTGCCGGTAAGAGTCTTG 40898 Query 138601 ACAAAAATCTGCAT 138614 || || || ||||| Sbjct 40897 ACGAAGATTTGCAT 40884 >seq335 Length=221524 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || ||||||||||| || ||| || ||||| || || || || | ||| Sbjct 117049 CCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 117108 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTG 138542 | |||||||| |||||||| || || || || ||||| ||| | || | || |||| Sbjct 117109 TCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC-CTGAATCTTGGACTTGACATTG 117167 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||||| | ||||| ||||||| || | ||| ||||| ||||| || || || Sbjct 117168 -TCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGAC 117226 Query 138603 AAAAATCTGCAT 138614 ||||||||||| Sbjct 117227 GAAAATCTGCAT 117238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496248039406800