Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1092 187 2e-42 seq335 107 2e-18 seq2283 102 8e-17 seq1473 98.7 9e-16 >seq1092 Length=189081 Score = 187 bits (206), Expect = 2e-42 Identities = 360/522 (69%), Gaps = 23/522 (4%) Strand=Plus/Minus Query 47067 ATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTC 47126 || |||||| | ||| | |||||||| |||||| | |||| |||| || | | ||| Sbjct 137460 ATTCCCTGCATCCGCCGCAAGGCCGACTGGGCCCTCAAGTGGATTGCCGACCACGA-GTC 137402 Query 47127 -ACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAG 47185 || | ||| ||||| || | || || ||| |||||| ||| |||||||||||||| Sbjct 137401 GACCTTTGCCCAACGTCTGGTGGCCTTTGCCGCCGTCGAAGGCATCTTCTTCTCGGGCGC 137342 Query 47186 CTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAA 47245 |||||| | || |||| || | || | ||||||||||| || ||| ||| Sbjct 137341 CTTTGCTTCCATCTTTTGGCTGCGCAAGCGCGGTCTCATGCCCGGCCTGACCTTTTCCAA 137282 Query 47246 CGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCT---CTACTA-CA 47301 |||||| || || | ||||| ||||||||||| |||||||||| || || || || Sbjct 137281 CGAGCTGATTTCCCGCGACGAGGGCCTGCACACAGACTTTGCCTGCCTGCTCTTCTCGCA 137222 Query 47302 ACACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCG 47361 | | | | || | | | || | | | || || || | |||| || | Sbjct 137221 CCTCAACAACCGCCCCA--GCAAGAAG----CTGATTGAG-GAAATCATCACCGACGCTG 137169 Query 47362 TCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACG 47421 |||||||||| | |||||| || |||| || |||||| || | | || ||||||| Sbjct 137168 TCGCCATTGAAAAGGAGTTCTTGACCGACGCCCTGCCCTGCGCTCTGCTCGGCATGAACG 137109 Query 47422 CGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGT-----TCAGCT 47476 | || |||||| ||||||| || ||||| |||||||| ||||| || || || Sbjct 137108 CCGACCTGATGAAGCAGTACATTGAGTTTGTTGCCGACCGTCTGCTGGTCGCCCTCGGC- 137050 Query 47477 AAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCT 47536 || | | ||| | |||| | || || || || || || ||| | ||||| ||||| Sbjct 137049 AACGAA----AAGGTCTACCGCTCCACCAACCCCTTTGACTTCATGGAGAACATCTCGCT 136994 Query 47537 CGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 || |||||||||||||| ||||||||||| |||||||| || Sbjct 136993 CGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGACTA 136952 >seq335 Length=221524 Score = 107 bits (118), Expect = 2e-18 Identities = 146/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 126913 TATCGTAGACT--CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGT 126970 || ||| |||| | || || || ||||| || || ||||| ||| || ||||| Sbjct 117036 TAGCGTGGACTGACCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCCTCCAGCTGC 117095 Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || |||||| |||||| |||||||| || || || ||||||||||||||| || || Sbjct 117096 TTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTG 117155 Query 127031 TGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTC 127090 ||||| | |||| ||||||| ||| || |||| ||| | ||| || || ||| Sbjct 117156 GACTTGACATTGTCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTC 117215 Query 127091 AGAGTTTTTACAAAAATCTGCAT 127113 || || || || ||||||||||| Sbjct 117216 AGGGTCTTGACGAAAATCTGCAT 117238 >seq2283 Length=86879 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| || || || || ||| || ||||| || || Sbjct 41080 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTACCC 41021 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| |||||||| || || || || |||||||||||| ||| || |||| Sbjct 41020 GCGAAAATCAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTG 40961 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | ||||| | | ||| |||| ||||||||||| || | || |||||||| ||||| Sbjct 40960 ACGTTGT-CAATGGTATCCGACGACTCGACTTCGAGAGTGATGGTCTTGCCGGTAAGAGT 40902 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || || ||||| Sbjct 40901 CTTGACGAAGATTTGCAT 40884 Score = 98.7 bits (108), Expect = 9e-16 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| || || || || || || ||||| |||||| Sbjct 40852 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTCCTCCAGCTGCTTTCCA 40793 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| |||||||| || ||||| ||||||||||| ||| ||| || |||| Sbjct 40792 GCAAAGATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTATCCTGGATCTTGGACTTG 40733 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | ||||| | | ||| |||| ||||||||||| || | || |||||||| || || Sbjct 40732 ACGTTGT-CAATGGTATCCGACGACTCGACTTCGAGAGTGATGGTCTTGCCGGTGAGGGT 40674 Query 127096 TTTTAC 127101 || || Sbjct 40673 CTTGAC 40668 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/238 (68%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 126876 ACTATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATAT 126935 ||| ||||| || || || | |||| |||| || | || ||||| || || || | Sbjct 41348 ACTTTACTGG-CCGCCACGCAGACGCAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGT 41290 Query 126936 TGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCT 126995 |||| ||| || || || ||| || ||||| || || ||| | |||| ||||||| Sbjct 41289 TGTAGTCGGACAGGGTACGGCCATCCTCCAGCTGCTTACCCGCGAAAATCAGGCGCTGCT 41230 Query 126996 GATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCG 127055 | || ||||| ||||||||||| ||| ||| ||| ||| | | |||| ||| || | Sbjct 41229 GGTCCGGAGGAATGCCCTCCTTATCCTGGATCTTCGACTTCACATTGTCGATGGTATCGG 41170 Query 127056 TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || | || | || |||||||| ||||| || || || || ||||| Sbjct 41169 AGGATTCCACCTCAAGAGTGATTGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 41112 >seq1473 Length=183801 Score = 98.7 bits (108), Expect = 9e-16 Identities = 132/181 (73%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || ||||| ||||| ||| || ||||| ||| || ||||| || ||||| ||||| Sbjct 105036 TTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 105095 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044 | |||||||| || || || ||||||||||||||| ||| || ||||| |||| || Sbjct 105096 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TC 105154 Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 || ||||||| |||||| || | ||| | || || || ||||| || || || || Sbjct 105155 GATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 105214 Query 127105 A 127105 | Sbjct 105215 A 105215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475487040195600