Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2283 96.9 3e-15 seq1750 86.0 6e-12 seq335 86.0 6e-12 >seq2283 Length=86879 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || || ||||| ||||| || || || | ||| ||| ||| Sbjct 41092 ACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCCTCC 41033 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || ||| | |||| || ||||||||||| ||||| || || || || || Sbjct 41032 AGCTGCTTACCCGCGAAAATCAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGG 40973 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || |||| || | || | ||| || || ||||||||||||||||| | || || Sbjct 40972 ATCTTGGACTTGA-CGTTGTCAATGGTATCCGACGACTCGACTTCGAGAGTGATGGTCTT 40914 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| ||||| || || || |||||||| Sbjct 40913 GCCGGTAAGAGTCTTGACGAAGATTTGCAT 40884 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | || || || || || || || ||||| ||||| || || ||| Sbjct 41338 CCGCCACGCAGACGCAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 41279 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| |||| || || || ||| | |||| || ||||||||||| ||| Sbjct 41278 AGGGTACGGCCATCCTCCAGCTGCTTACCCGCGAAAATCAGGCGCTGCTGGTCCGGAGGA 41219 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| || ||||| || || || || | || | ||| ||||| || || || Sbjct 41218 ATGCCCTCCTTATCCTGGATCTTCGACTTCACATTGTCGATGGTATCGGAGGATTCCACC 41159 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| | || |||||||| ||||| || || || |||||||| Sbjct 41158 TCAAGAGTGATTGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 41112 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||| || ||||| || | |||| || ||||||||||| |||||||| || ||| Sbjct 40810 TCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTA 40751 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 || || || || |||| || | || | ||| || || ||||||||||||||||| | Sbjct 40750 TCCTGGATCTTGGACTTGA-CGTTGTCAATGGTATCCGACGACTCGACTTCGAGAGTGAT 40692 Query 45305 CGTTTTGCCGGTTAGAGTTTTTAC 45328 || |||||||| || || || || Sbjct 40691 GGTCTTGCCGGTGAGGGTCTTGAC 40668 >seq1750 Length=138661 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 124105 TGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAAC 124164 |||||| ||||||||||||| || || | | | ||||||||| || | || Sbjct 36272 TGCAGTTTGACATGTGGAATGTCACTCCCAGTGACCTCTGGGACTGG-GCTTCGCTCAAG 36330 Query 124165 AACGCATATC--GACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGC 124222 | ||| ||| | ||||||| |||| ||||||||| || |||| |||||| ||||| Sbjct 36331 GA-GCAGATCAAGCAGCACGGTGTGCGCAACTCGCTGCTGCTGGCTCCCATGCCTACGGC 36389 Query 124223 AACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTA 124282 | ||| | || ||| | || ||||| || | ||| ||||||| |||| ||| | || Sbjct 36390 CAGCACGTCGCAGATTCTGGGCAACAATGAGTGCTTTGAGCCGTACACTTCCAACATTTA 36449 Query 124283 CGTGCGACGAGTGTTAGCCGGCGATTTTCAAGT 124315 | ||| || ||| | ||||| || || || || Sbjct 36450 CCAGCGTCGTGTGCTTGCCGGTGAGTTCCAGGT 36482 >seq335 Length=221524 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| |||| || || || ||| | |||| || ||||||||||| |||||||| || || Sbjct 117083 ATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTT 117142 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 || ||||| || |||| || | ||||| || ||||| || ||||| |||| Sbjct 117143 GTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCCGAGGACTCAACCTCGAGGGTAAT 117202 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| || || || || || || || ||||| |||||| Sbjct 117203 CGTCTTACCCGTCAGGGTCTTGACGAAAATCTGCATC 117239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451990120157400