Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1092 136 5e-27 >seq1092 Length=189081 Score = 136 bits (150), Expect = 5e-27 Identities = 527/814 (65%), Gaps = 17/814 (2%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| || |||| ||| |||||||| Sbjct 136951 GTAGTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTCTCCAT 137010 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAAT-TGTTGGCACCCCAATCTGTTTGAGGAGAC 127349 || ||||| ||||| | ||| | | | || | || | | || |||| Sbjct 137011 GAAGTCAAAGGGGTTGGTGGAGCGGTAGACCTTTTCGTTGCCGAGGGCGACC-AGCAGAC 137069 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 | || | || |||||||||||| |||| || | |||||| |||| || | Sbjct 137070 GGTCGGCAACAAACTCAATGTACTGCTTCATCAGGTCGGCGTTCATGCCGAGCAGAGCGC 137129 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 | || || ||||| | |||| |||| |||||| | ||||| || | ||| | | Sbjct 137130 AGGGCAGGGCGTCGGTCAAGAACTCCTTTTCAATGGCGACAGCGTCGGTGATGATTTCCT 137189 Query 127470 GAATAGTGTCCACCCCAGGTCTATTGCGTAAAGT-CTTGAAGAGTTCCA--CAG-CAAAC 127525 ||| | | | || | ||| | | || | |||||| || ||| |||| Sbjct 137190 CAATCAGCTTCTTGCTGGGGCGGTTGT-TGAGGTGCGAGAAGAG---CAGGCAGGCAAAG 137245 Query 127526 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 127585 ||| ||| || |||||||| ||||| || || || || || ||| ||| || |||||| Sbjct 137246 TCTGTGTGCAGGCCCTCGTCGCGGGAAATCAGCTCGTTGGAAAAGGTCAGGCCGGGCATG 137305 Query 127586 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 127645 ||||| ||||| || ||| || || | | ||| | ||| ||||||||||| || || Sbjct 137306 AGACCGCGCTTGCGCAGCCAAAAGATGGAAGCAAAGGCGCCCGAGAAGAAGATGCCTTCG 137365 Query 127646 ACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAACCACTT 127704 || || || || | ||||| | |||||||| || | | || ||| |||||| Sbjct 137366 ACGGCGGCAAAGGCCACCAGACGTTGGGCAAAGG-TCGACTCGTGGTCGGCAATCCACTT 137424 Query 127705 CATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTC 127764 | ||||| | ||||| ||| || || | || | || || | ||| || | Sbjct 137425 GAGGGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTATCAATGGCGTTAAACAGGTA 137484 Query 127765 CTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTG 127824 | | | || || ||||||||| | || || || || ||||| ||| ||| Sbjct 137485 GCTGCGCTGGGCGGGCTCCTTGATGTACGTGTCAATCAGCAGCGAGTATGTCTCGGAGTG 137544 Query 127825 GACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCT 127883 || | | ||| || | |||| | ||||||| |||| || ||| ||||| |||| Sbjct 137545 GATGTTCTCCATCAT-GATCTGAAAGCCGTAGAAGCAGCGGGCCTCGGGGATCTGGACCT 137603 Query 127884 CATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACG 127943 | | | || | | ||||| ||||| || || ||| | ||||| || | Sbjct 137604 CGCCCGAGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGACGCGGCAAAGAAGG 137663 Query 127944 CCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCGA 128000 |||| | | | ||||| | || ||| | || ||||| || | |||||||||| | Sbjct 137664 CCAGCACGTGCGAGATGAAGTACTTTTCGTCCTTGTTCATGCGGTTGTTCCAGTCGTGCA 137723 Query 128001 GATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 | ||||| || || || | |||||| |||||||| Sbjct 137724 GGTCCTTGGACAGGTCAATCTCCTCGGCAGTCCA 137757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613489446635400