Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1750 179 6e-40 >seq1750 Length=138661 Score = 179 bits (198), Expect = 6e-40 Identities = 487/726 (67%), Gaps = 17/726 (2%) Strand=Plus/Minus Query 203838 TCTTG-TCCACCGTGAACTGAAT-GGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACA 203894 ||||| || || || |||||||| |||| | | |||| |||| | | ||| ||||||| Sbjct 36839 TCTTGGTCAACAGTAAACTGAATAGGCGC-CGCAGCAG-CCTGAGTACGCAGGTAGTACA 36782 Query 203895 TGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGT 203954 |||| ||||| || ||| || ||| ||| | ||||||| | | |||| || | Sbjct 36781 TGCCCGTCTTGAGACCCAGCTTCCAGCCGGCAAAGTGCATGCTGGTAATCTTGCCCATGG 36722 Query 203955 TGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCT 204013 | ||||| |||||||||||| || ||||| |||||||| |||||| || || || Sbjct 36721 TAGGGTCCTTCATGTGAATGTTGAGCGACTGCGACTGGTCGAT-AAAGGCACCACGGTCG 36663 Query 204014 GCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTG 204073 || ||||| | | | || |||||||||||||||||| |||||| ||| | || Sbjct 36662 GCAGCCATCTGCACCACCGTGCGCTGCGAAATCTCCCACACTGTCTTGTACAGAGCCTTG 36603 Query 204074 GTGTGTTGAGGCACATCTTCCCACGTCCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCAT 204132 ||| | || | || | || |||| | || ||||| ||||| || | | | Sbjct 36602 ATGTCGTCGGGAATG-CTGGGAATGTTCTGAATAGAACCGTTCTCGGCAATAATGCGGTT 36544 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 | || | | || ||||| |||| | ||| || |||| ||| ||||| | Sbjct 36543 CTTCATGTTATCAGACCACAGACCCAGGTCAACCAGGTCACGCAGCAGCCACGGGTTCAC 36484 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 | ||| || || |||| ||||| | || | | | |||| ||| | || || || Sbjct 36483 AACCTGGAACTCACCGGCAAGCACACGACGCTGGTAAATGTTGGAAGTGTACGGCTCAAA 36424 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 ||| |||||||| | |||||| | ||||||||||| |||||||||||||| ||||| Sbjct 36423 GCACTCATTGTTGCCCAGAATCTGCGACGTGCTGGCCGTAGGCATGGGAGCCAGCAGCAG 36364 Query 204313 GGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCATCG 204371 |||||||||||||||| | | || |||| ||| || || | |||||| | Sbjct 36363 CGAGTTGCGCACACCGTGCTGCTTGA-TCTGCTCCTTGAGCGAAGCCCAGTCCCAGAGGT 36305 Query 204372 CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCT 204431 ||||||| | || ||||||||| ||||| | |||||| || || || |||| Sbjct 36304 CACTGGGAGTGACATTCCACATGTCAAACTGCAGGATGCCCTGCGAAACAGGCGAACCCT 36245 Query 204432 TGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGAT 204491 ||| |||| || | ||||| | || | || || || | || ||| | Sbjct 36244 CGTAGGTCGAGTACGTGCCCTCCTCCTTGGCAATCTCCATGGACGCCGTCAGGGCAGCGT 36185 Query 204492 AGTACATGGTCTCAAAGATCTGAACGTTTAATCTGGCG-GCCTCCGTTCCG--TCAAACG 204548 ||| || ||||||||||||||| | || | || ||| ||||| | ||| ||||||| Sbjct 36184 GGTAAATAGTCTCAAAGATCTGAGTG-TTGAGCTTGCGAGCCTCGG--CCGACTCAAACG 36128 Query 204549 CCAGAC 204554 || || Sbjct 36127 GCATAC 36122 Score = 104 bits (114), Expect = 4e-17 Identities = 434/675 (64%), Gaps = 20/675 (3%) Strand=Plus/Minus Query 204923 CCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATT 204982 |||| || || ||||| ||||||||| ||| ||||||||||| ||| ||||| | Sbjct 35834 CCCAGATTCTTTTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATAAACGGGTTG 35775 Query 204983 CCGTTCTCCATCTGAGATCGCAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTC 205042 || |||| |||| | || |||| ||||| | | |||| || || | Sbjct 35774 CCAGTCTCGGTCTGGGCCTCCAAAATGGCATACCACAGCTTCTGGGCCTTGACCGACTGC 35715 Query 205043 -----ACGTACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGT 205097 ||| | ||| | |||||| ||| |||||| ||| |||| || |||| Sbjct 35714 CGACCACGGCCCTCCTT-----CTCGTACTTTTCGTACAGAGCCTCAAATTCCTCGCCGT 35660 Query 205098 ACACGTCCATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCT-GATCGTCT 205156 | ||| ||| || || || | |||||||||||||| | ||| ||| | || ||| Sbjct 35659 AGCAGTCAGCCAGGCCAGGGCACTCGTTGGGACACATCAGGGTCCAGTTCTCGTTCTTCT 35600 Query 205157 TTCACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTA 205216 || | || ||| |||| |||| |||||||| | ||||| |||||||| | Sbjct 35599 CG-ACACGCTTCATGAACATGTCGGGAATCCACAGAGCTAGGAACAGGTCACGGGCGCGG 35541 Query 205217 ATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCAC 205276 | | || | ||| | ||||| || ||| || | | | |||||||||||| Sbjct 35540 ACCTCCTCCTTACCATGATTCTTGCGCAGGTCAAGGAACTCAAACACATCGGCGTGCCAC 35481 Query 205277 GGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGA 205336 ||||| | | | ||| | || || || | |||||| || |||||||| || ||| Sbjct 35480 GGCTCCAGGTAAATGGCAAAAGCACCAGGGCGCTTGTTGCCGCCCTGGTCGACATAGCGG 35421 Query 205337 GTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTG 205396 | | |||||| || |||||||| || | | ||||||| ||| ||||| || | Sbjct 35420 GCAGTGTTGTTGAACACGCGCAGCATGGGGATAATGCCGTTGGAGGTACCGTTGGTACCA 35361 Query 205397 TTGATGGCCGAGCC--TTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAAC 205454 ||| |||||| | || ||| || | || | ||| || || |||| Sbjct 35360 GCAATGTACGAGCCAGTGGCGCGGATACGGTGAACATTG--AGGCCGATACCACCAGCCA 35303 Query 205455 ACTTGGCGATCTGGGCGC-ACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCC 205513 ||||| ||| || | | ||||| ||||| ||| |||||| | || || || ||| Sbjct 35302 TCTTGGAAATCATAGCACAAGTCTTG-AGAGTATCGTAAATGCCTTCAATCGAGTCCTCC 35244 Query 205514 GCCAGTGTC-ACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAG 205572 || |||| |||||| |||| || | ||||| ||| || || |||| ||| || Sbjct 35243 TTCA-TGTCAACCAGAAAGCAAGATGACAGCTGGGCCTGAGGAGTACCAGCGTTGAACAG 35185 Query 205573 CGTGGGGCTGGCGTG 205587 ||||| |||||| Sbjct 35184 AGTGGGCGAGGCGTG 35170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795132190196400