Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2283 136 9e-27 seq335 127 5e-24 seq1473 98.7 2e-15 >seq2283 Length=86879 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || |||||||| || |||||||| |||| ||||||||| | || || Sbjct 41332 CGCAGACGCAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTA 41273 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| || ||||| || || ||||||||||||||| ||| || Sbjct 41272 CGGCCATCCTCCAGCTGCTTACCCGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATGCCC 41213 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| |||| ||| || | | ||| || || | Sbjct 41212 TCCTTATCCTGGATCTTCGACTTCACATTGTCGATGGTATCGGAGGATTCCACCTCAAGA 41153 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || ||||| || || || ||||| Sbjct 41152 GTGATTGTCTTGCCGGTAAGAGTCTTGACGAAGATTTG 41115 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||| ||||| |||||||| |||| ||||||||||| || || Sbjct 41104 CGAAGGCGGAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTA 41045 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| || ||||| || ||||||||||||||||| ||| || Sbjct 41044 CGGCCATCCTCCAGCTGCTTACCCGCGAAAATCAGACGCTGCTGGTCCGGGGGAATACCC 40985 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| || | ||| || | | || || || | Sbjct 40984 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCGACTTCGAGA 40925 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || ||||| || || || ||||| Sbjct 40924 GTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTG 40887 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||||||||| |||||||| |||| ||| ||||| | || || Sbjct 40592 CGAAGGCGGAGAACCAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCGGACAGGGTA 40533 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || |||||||||||||| || ||||| ||||||||||||||||| ||| || Sbjct 40532 CGGCCGTCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATACCC 40473 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| |||||| ||| || |||| |||||| | | ||| || || | Sbjct 40472 TCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTGTCGGAAGATTCCACCTCAAGG 40413 Query 199589 GTGATCGTCTTACCCGT 199605 ||||| ||||| ||||| Sbjct 40412 GTGATAGTCTTGCCCGT 40396 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||| ||||| |||||||| |||| ||||||||||| || || Sbjct 40876 CGAAGGCGGAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTA 40817 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || |||||||||||||| || ||||| |||||||||||||||||| ||| || Sbjct 40816 CGGCCGTCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCCGGAGGAATGCCC 40757 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| || | ||| || | | || || || | Sbjct 40756 TCCTTATCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCGACTTCGAGA 40697 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 ||||| ||||| || ||||| || || || Sbjct 40696 GTGATGGTCTTGCCGGTGAGGGTCTTGAC 40668 >seq335 Length=221524 Score = 127 bits (140), Expect = 5e-24 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 199430 AGAGTCGACT--CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCT 199487 || || |||| |||| |||| ||||||||||| || ||| | ||||| |||||||||| Sbjct 117037 AGCGTGGACTGACCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCCTCCAGCTGCT 117096 Query 199488 TTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTT 199547 | || |||||||| ||||||||||||||||| ||| || || ||||||||||| Sbjct 117097 TGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGG 117156 Query 199548 GCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGA 199607 ||| || |||| ||||| | | || || || | || |||||||||||||| | Sbjct 117157 ACTTGACATTGTCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCA 117216 Query 199608 GAGTTTTCACAAAAATTTG 199626 | || || || ||||| || Sbjct 117217 GGGTCTTGACGAAAATCTG 117235 >seq1473 Length=183801 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| || | ||||||||| | || || | ||||| || |||||||| || || |||| Sbjct 105034 CCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 105093 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | ||||||||||||||||| ||| || || ||||| ||||| ||| ||| | Sbjct 105094 TCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 105153 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| ||||| | | || || |||| || || ||||||||||| || || || || | Sbjct 105154 CGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGA 105213 Query 199620 AA 199621 || Sbjct 105214 AA 105215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178886632080105