Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2283 125 8e-24 seq1473 109 6e-19 seq335 109 6e-19 >seq2283 Length=86879 Score = 125 bits (138), Expect = 8e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| | ||| || | | ||||| ||||| || | || |||||| ||||| ||||| Sbjct 41345 TTACTGGCCGCCACGCAGACGCAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTA 41286 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||||| || || || | || || |||||||| || ||||| |||| |||||||||||| Sbjct 41285 GTCGGACAGGGTACGGCCATCCTCCAGCTGCTTACCCGCGAAAATCAGGCGCTGCTGGTC 41226 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 | || | || |||||| ||| ||||||| ||| | | | | || ||| || Sbjct 41225 CGGAGGAATGCCCTCCTTATCCTGGATCTTCGACTTCACATTGTCGATGGTATCGGAGGA 41166 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| || | ||||| || ||||| || || || || || ||||||||||| Sbjct 41165 TTCCACCTCAAGAGTGATTGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 41112 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| |||||| ||||| |||||||| || || || || | || || Sbjct 41092 ACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCCTCC 41033 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || ||||| |||| ||||||||||| | || | | |||||||||| | Sbjct 41032 AGCTGCTTACCCGCGAAAATCAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGG 40973 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||||| ||| | || | | || ||| || || || | |||||||| || Sbjct 40972 ATCTTGGACTTGA-CGTTGTCAATGGTATCCGACGACTCGACTTCGAGAGTGATGGTCTT 40914 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || || || || ||||||||||| Sbjct 40913 GCCGGTAAGAGTCTTGACGAAGATTTGCAT 40884 Score = 104 bits (114), Expect = 3e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| || |||||||| || || || |||| || |||||||| || || || Sbjct 40563 CTCCTTCTGGATGTTATAGTCGGACAGGGTACGGCCGTCCTCCAGCTGCTTTCCAGCAAA 40504 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||| | || | | |||||||||| |||||| ||||| | Sbjct 40503 GATCAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTTGACTTGACATT 40444 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571 | | |||||| |||||||| || | ||||| || |||||||||| Sbjct 40443 GTCGATGGTGTCGGAAGATTCCACCTCAAGGGTGATAGTCTTGCCCGTCA 40394 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| |||||| ||||| |||||||| || || || || |||| || Sbjct 40864 ACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTCCTCC 40805 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || |||| ||||||||||| | || | || |||||| ||| | Sbjct 40804 AGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTATCCTGG 40745 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||||| ||| | | | || || ||| || || || | |||||||| || Sbjct 40744 ATCTTGGACTTGA-CGTTGTCAATGGTATCCGACGACTCGACTTCGAGAGTGATGGTCTT 40686 Query 46564 GCCCGTCAGCGTTTTAAC 46581 ||| || || || || || Sbjct 40685 GCCGGTGAGGGTCTTGAC 40668 >seq1473 Length=183801 Score = 109 bits (120), Expect = 6e-19 Identities = 135/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| || || ||||||||||| || ||||| | || || ||||||||||| || || | Sbjct 105034 CCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 105093 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| ||||||||||| | || | || |||||||||| |||||| ||||| ||| | Sbjct 105094 TCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTG 105152 Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| || || || |||| || ||||| || |||||||| || || || Sbjct 105153 TCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACG 105212 Query 46583 AA 46584 || Sbjct 105213 AA 105214 >seq335 Length=221524 Score = 109 bits (120), Expect = 6e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 46396 TGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCC 46455 || ||| |||| ||||| |||||||| || |||||||| | || || ||||||||||| Sbjct 117041 TGGACTGACCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCCTCCAGCTGCTTGCC 117100 Query 46456 GGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTT 46515 ||||| |||| ||||||||||| | || | || |||||||||| ||||| ||| Sbjct 117101 AGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTT 117160 Query 46516 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575 || | | | ||||| || || || || | || || || || |||||||| || Sbjct 117161 GACATTGTCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGT 117220 Query 46576 TTTAACAAAGATTTGCATTTTGCAC 46600 || || || || ||||| ||| || Sbjct 117221 CTTGACGAAAATCTGCATCTTGAAC 117245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565222043413800