Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1628 190 3e-43 seq1750 95.1 2e-14 >seq1628 Length=158365 Score = 190 bits (210), Expect = 3e-43 Identities = 281/398 (71%), Gaps = 0/398 (0%) Strand=Plus/Minus Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 || |||||||||| ||| || || || || || | ||||| || |||||||| | ||| Sbjct 40349 TCCTCACCACCCAGGTGAGTGTCACCAGCAGTGGACTTGACCTCGAAGATACCATCCTCA 40290 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582 ||| | | || ||| ||||| || |||||||||||||| ||||| || || ||||| Sbjct 40289 ATGGTCAGCAGCGACACATCGAAAGTACCACCACCCAGATCAAAGATCAGGACGTTGCGC 40230 Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642 ||| | || ||||| || |||||||| || || || || || || || || || || Sbjct 40229 TCGCCCTCAACCTTCTTGTCAAGACCGTAGGCAATGGCAGCGGCAGTGGGCTCGTTGATG 40170 Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702 ||||| || ||| || |||||||| | ||||| || || || || || || || Sbjct 40169 ATACGCAGGACGTTGAGACCAGCAATGAGACCAGCATCCTTGGTGGCCTGACGCTGAGAG 40110 Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762 ||||| ||||| || || || || | ||| |||| | || | |||| || ||||| Sbjct 40109 TCGTTGAAGTAAGCGGGAACAGTGATGACGGCGTTGTTAACGCTGGTACCCAGGTACGAC 40050 Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 || || | || ||| ||||| |||||||| || || ||||| |||| | ||||| Sbjct 40049 TCGGCAGTCTCACGCATCTTGGTCAGAACCATGGAGGAGATCTCCTCAGGAGTGAACTGC 39990 Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT 7860 || || || || || || ||||| | ||| || || || Sbjct 39989 TTGGTCTCGCCCTTGAACTCAACCTGAATGATAGGCTT 39952 >seq1750 Length=138661 Score = 95.1 bits (104), Expect = 2e-14 Identities = 293/448 (65%), Gaps = 19/448 (4%) Strand=Plus/Minus Query 105559 TCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTC 105618 || || || |||||||||| || |||||||||| ||| || ||||| || | Sbjct 35600 TCGACACGCTTCATGAACATGTCGGGAATCCACAGAGCTAGGAACAGGTCACGGGCGCGG 35541 Query 105619 GCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCAT 105678 |||| || | ||| |||||| || | || || || || | | |||||||||||| Sbjct 35540 ACCTCCTCCTTACCATGATTCTTGCGCAGGTCAAGGAACTCAAACACATCGGCGTGCCAC 35481 Query 105679 GGTTCTAAATAGACTGCAATAG-ACC------CTTTACGACGCCCCGCTTGATTGACATA 105731 || || | || | |||| || ||| ||| | ||||| || | |||||| Sbjct 35480 GGCTCCAGGTAAATGGCAAAAGCACCAGGGCGCTTGTTGCCGCCC----TGGTCGACATA 35425 Query 105732 TCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGT 105791 | || || ||| |||| || | ||| || ||||| || | ||| || || || || Sbjct 35424 GCGGGCAGTGTTGTTGAACACGCGCAGCATGGGGATAATGCCGTTGGAGGTACCGTTGGT 35365 Query 105792 TCCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGC 105851 ||| ||| | || | | || || | | |||||| | | || ||||| ||||| Sbjct 35364 ACCAGCAATGTACGAGCCAGTGGCGCGGATACGGTGAACATTGAGGCCGATACCACCAGC 35305 Query 105852 CCACTT---ACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATC 105908 | ||| | | ||| ||||| || | ||||||||||| || || || || Sbjct 35304 CATCTTGGAAATCATA---GCACAAGTCTTGAGAGTATCGTAAATGCCTTCAATCGAGTC 35248 Query 105909 TTCCTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTG-GGTGTACCAGCATTGA 105967 ||||| | ||| ||| || || ||||||| || || ||| || |||||||| |||| Sbjct 35247 CTCCTTCATGTCAACCAGAAAGCAAGATGACAGCTG-GGCCTGAGGAGTACCAGCGTTGA 35189 Query 105968 ACAGAGTTGGTGTTGCATGAATGAACAA 105995 ||||||| || | || ||| | || || Sbjct 35188 ACAGAGTGGGCGAGGCGTGAGTAAAGAA 35161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635114420844600