Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1750 136 1e-26 seq424 116 1e-20 seq1 116 1e-20 seq2272 86.0 2e-11 >seq1750 Length=138661 Score = 136 bits (150), Expect = 1e-26 Identities = 498/773 (64%), Gaps = 15/773 (2%) Strand=Plus/Minus Query 155592 GACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCAC 155651 || ||||| || || || ||| ||| | | | | ||| || | ||||||| |||| Sbjct 35915 GAGGCCAGGTTGCACACAGCAACCTCATCAGGGGCACAGTACTCGATAATCTCAGTGCAC 35856 Query 155652 AGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCC 155711 ||||| || || ||||| || | |||||| ||||| || | ||| || ||| Sbjct 35855 AGGTTGGAGCTGCGAATGGTACCCAGATTCTTTTGGTTGCTCTTGCGGTTGCAGTGGTCC 35796 Query 155712 TTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGG 155771 ||||| || || | ||| | || ||||| |||| || |||| ||| ||| || Sbjct 35795 TTGTACAGCATAAACGGGTTGCCAGTCTCGGTCTGGGCCTCCAAAATGGCATACCACAGC 35736 Query 155772 TCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATA--TTTCATATACAGCG 155829 | |||| || | || | ||| ||| ||| || |||| || | ||| Sbjct 35735 TTCTGGGCCTTGACCGACTGCCGACCACGGCCCTCCTTCTCGTACTTTTCGTACAGAGCC 35676 Query 155830 TTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCG 155889 | | ||||| ||||| || ||| ||| |||||||||| | ||| || | ||| | Sbjct 35675 TCAAAT--TCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTGGGACACATCAGGG 35618 Query 155890 ACCAAATTT---TATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCAT 155946 ||| | | | || ||| |||||| ||| || | || ||| | ||| Sbjct 35617 TCCAGTTCTCGTTCTTCTCGA---CACGCTTCATGAACATGTCGGGAATCCACAGAGCTA 35561 Query 155947 AGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATT 156006 ||| ||||| | || |||||| | || |||||||| || || || | ||| | Sbjct 35560 GGAACAGGTCACGGGCGCGGACCTCCTCCTTACCATGATTCTTGCGCAGGTCAAGGAACT 35501 Query 156007 CCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---C 156063 | | ||| | || |||||||| || || |||||| |||| | |||| | Sbjct 35500 CAAACACATCGGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGGCGCTTGTTGC 35441 Query 156064 CACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCAT 156123 | ||||| || ||||| || ||||| || ||||| || | ||||| || ||||| || | Sbjct 35440 CGCCCTGGTCGACATAGCGGGCAGTGTTGTTGAACACGCGCAGCATGGGGATAATGCCGT 35381 Query 156124 TGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTA 156183 |||| || || ||||| || ||| | ||| |||| | ||| | | |||| || | Sbjct 35380 TGGAGGTACCGTTGGTACCAGCAATGTACGAGCCAGTGGCGCGGATACGGTGAACATTGA 35321 Query 156184 GTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATA 156242 | || |||||||| | |||| || ||||| ||| || ||| | ||||| | |||| Sbjct 35320 GGCCGATACCACCAG-CCATCTTGGAAATCATAGCACAAGTCTTGAGAGTATCGTAAATG 35262 Query 156243 CCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGT 156302 |||||||| || || || | ||| | ||| |||| || | || | | || Sbjct 35261 CCTTCAATCGAGTCCTCCTTCATGTCAACCAGAAAGCAAGATGACAGCTGGGCCTGAGGA 35202 Query 156303 GTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACAT 156355 || ||||||||||| || || || | || ||| |||| |||| | ||||| Sbjct 35201 GTACCAGCGTTGAACAGAGTGGGCGAGGCGTGAGTAAAGAACTTGCTCGACAT 35149 >seq424 Length=67578 Score = 116 bits (128), Expect = 1e-20 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || |||||||| | | || | || |||| | |||||||||| | ||| | || || Sbjct 48627 ATCAGACCACAAATCTCGCAAATGTGCACGCGGAAAGCATCAGACACCTCAAACAGACGC 48686 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 ||||| ||| || |||||||| | |||||| ||||||||||||||||| |||||| Sbjct 48687 TCCTTGAGGAAAGCAGCAGCACCGTGGGCAATCATGCAATCACGCTCCATTTCTCCGAAA 48746 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT 251570 || ||||||||||| ||||| | ||| ||| | ||||| || || Sbjct 48747 CGCAGACCACCATCACGAGCACGACCTTCGACGGGCTGGCGTGT 48790 >seq1 Length=479719 Score = 116 bits (128), Expect = 1e-20 Identities = 197/283 (70%), Gaps = 2/283 (1%) Strand=Plus/Plus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | |||||| ||||| || || || | || || ||||| || ||||| || Sbjct 373629 CTTGACCAGACGACGTTGAATGTAGCCGGTCTCGGCAGTCTTGACAGCCGTGTCAATAAG 373688 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAA 302701 ||| |||||||| |||| || |||||||| | || | || || || || | || Sbjct 373689 ACCCTCACGACCAGCCATGGCGTGGAAGAAAAATTCG-CTGGGAGTCAGACCACGAAGGT 373747 Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761 | ||| | || || || ||||| |||||||| || | || |||||| ||||| || | Sbjct 373748 ACGAGTTTTCGACAAAGCCACGGGCCTCGGGGGAGTAATCATCCTTGGTGAAGTGGGGAA 373807 Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821 |||| | || || ||||| | |||||||| || || || || ||||||| || | Sbjct 373808 GGGTGCGGTACTTGAAGCCGAAGGGGATACGTTTACCCTCGACAATCTGCTGGCCGACTA 373867 Query 302822 ACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 || |||||||||||||||| | | ||||||||||| Sbjct 373868 GCGCCGTCATCTGCGAAATATTGATGGTAGAACCCTTGGAGCC 373910 >seq2272 Length=86883 Score = 86.0 bits (94), Expect = 2e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 251482 GATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCG 251541 || || |||| || ||||| ||||||||||||||||||||| | ||| |||||||| ||| Sbjct 66674 GACGCGCCGTATGCAATCAAACAATCACGCTCCATTTCACCCAGACGCAGACCACCTTCG 66615 Query 251542 CGAGCCCTACCCTCGGCAGGCTGACGAGTGAG 251573 || | || |||||| | ||||| || || || Sbjct 66614 CGCGACCGACCCTCAGTCGGCTGGCGGGTCAG 66583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471773944510155