Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04-
03] 2,315 sequences; 28,117,660 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1750 136 1e-26
seq424 116 1e-20
seq1 116 1e-20
seq2272 86.0 2e-11
>seq1750
Length=138661
Score = 136 bits (150), Expect = 1e-26
Identities = 498/773 (64%), Gaps = 15/773 (2%)
Strand=Plus/Minus
Query 155592 GACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCAC 155651
|| ||||| || || || ||| ||| | | | | ||| || | ||||||| ||||
Sbjct 35915 GAGGCCAGGTTGCACACAGCAACCTCATCAGGGGCACAGTACTCGATAATCTCAGTGCAC 35856
Query 155652 AGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCC 155711
||||| || || ||||| || | |||||| ||||| || | ||| || |||
Sbjct 35855 AGGTTGGAGCTGCGAATGGTACCCAGATTCTTTTGGTTGCTCTTGCGGTTGCAGTGGTCC 35796
Query 155712 TTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGG 155771
||||| || || | ||| | || ||||| |||| || |||| ||| ||| ||
Sbjct 35795 TTGTACAGCATAAACGGGTTGCCAGTCTCGGTCTGGGCCTCCAAAATGGCATACCACAGC 35736
Query 155772 TCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATA--TTTCATATACAGCG 155829
| |||| || | || | ||| ||| ||| || |||| || | |||
Sbjct 35735 TTCTGGGCCTTGACCGACTGCCGACCACGGCCCTCCTTCTCGTACTTTTCGTACAGAGCC 35676
Query 155830 TTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCG 155889
| | ||||| ||||| || ||| ||| |||||||||| | ||| || | ||| |
Sbjct 35675 TCAAAT--TCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTGGGACACATCAGGG 35618
Query 155890 ACCAAATTT---TATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCAT 155946
||| | | | || ||| |||||| ||| || | || ||| | |||
Sbjct 35617 TCCAGTTCTCGTTCTTCTCGA---CACGCTTCATGAACATGTCGGGAATCCACAGAGCTA 35561
Query 155947 AGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATT 156006
||| ||||| | || |||||| | || |||||||| || || || | ||| |
Sbjct 35560 GGAACAGGTCACGGGCGCGGACCTCCTCCTTACCATGATTCTTGCGCAGGTCAAGGAACT 35501
Query 156007 CCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---C 156063
| | ||| | || |||||||| || || |||||| |||| | |||| |
Sbjct 35500 CAAACACATCGGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGGCGCTTGTTGC 35441
Query 156064 CACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCAT 156123
| ||||| || ||||| || ||||| || ||||| || | ||||| || ||||| || |
Sbjct 35440 CGCCCTGGTCGACATAGCGGGCAGTGTTGTTGAACACGCGCAGCATGGGGATAATGCCGT 35381
Query 156124 TGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTA 156183
|||| || || ||||| || ||| | ||| |||| | ||| | | |||| || |
Sbjct 35380 TGGAGGTACCGTTGGTACCAGCAATGTACGAGCCAGTGGCGCGGATACGGTGAACATTGA 35321
Query 156184 GTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATA 156242
| || |||||||| | |||| || ||||| ||| || ||| | ||||| | ||||
Sbjct 35320 GGCCGATACCACCAG-CCATCTTGGAAATCATAGCACAAGTCTTGAGAGTATCGTAAATG 35262
Query 156243 CCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGT 156302
|||||||| || || || | ||| | ||| |||| || | || | | ||
Sbjct 35261 CCTTCAATCGAGTCCTCCTTCATGTCAACCAGAAAGCAAGATGACAGCTGGGCCTGAGGA 35202
Query 156303 GTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACAT 156355
|| ||||||||||| || || || | || ||| |||| |||| | |||||
Sbjct 35201 GTACCAGCGTTGAACAGAGTGGGCGAGGCGTGAGTAAAGAACTTGCTCGACAT 35149
>seq424
Length=67578
Score = 116 bits (128), Expect = 1e-20
Identities = 124/164 (76%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
|| |||||||| | | || | || |||| | |||||||||| | ||| | || ||
Sbjct 48627 ATCAGACCACAAATCTCGCAAATGTGCACGCGGAAAGCATCAGACACCTCAAACAGACGC 48686
Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526
||||| ||| || |||||||| | |||||| ||||||||||||||||| ||||||
Sbjct 48687 TCCTTGAGGAAAGCAGCAGCACCGTGGGCAATCATGCAATCACGCTCCATTTCTCCGAAA 48746
Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT 251570
|| ||||||||||| ||||| | ||| ||| | ||||| || ||
Sbjct 48747 CGCAGACCACCATCACGAGCACGACCTTCGACGGGCTGGCGTGT 48790
>seq1
Length=479719
Score = 116 bits (128), Expect = 1e-20
Identities = 197/283 (70%), Gaps = 2/283 (1%)
Strand=Plus/Plus
Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642
||||| | |||||| ||||| || || || | || || ||||| || ||||| ||
Sbjct 373629 CTTGACCAGACGACGTTGAATGTAGCCGGTCTCGGCAGTCTTGACAGCCGTGTCAATAAG 373688
Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAA 302701
||| |||||||| |||| || |||||||| | || | || || || || | ||
Sbjct 373689 ACCCTCACGACCAGCCATGGCGTGGAAGAAAAATTCG-CTGGGAGTCAGACCACGAAGGT 373747
Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761
| ||| | || || || ||||| |||||||| || | || |||||| ||||| || |
Sbjct 373748 ACGAGTTTTCGACAAAGCCACGGGCCTCGGGGGAGTAATCATCCTTGGTGAAGTGGGGAA 373807
Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821
|||| | || || ||||| | |||||||| || || || || ||||||| || |
Sbjct 373808 GGGTGCGGTACTTGAAGCCGAAGGGGATACGTTTACCCTCGACAATCTGCTGGCCGACTA 373867
Query 302822 ACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864
|| |||||||||||||||| | | |||||||||||
Sbjct 373868 GCGCCGTCATCTGCGAAATATTGATGGTAGAACCCTTGGAGCC 373910
>seq2272
Length=86883
Score = 86.0 bits (94), Expect = 2e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 251482 GATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCG 251541
|| || |||| || ||||| ||||||||||||||||||||| | ||| |||||||| |||
Sbjct 66674 GACGCGCCGTATGCAATCAAACAATCACGCTCCATTTCACCCAGACGCAGACCACCTTCG 66615
Query 251542 CGAGCCCTACCCTCGGCAGGCTGACGAGTGAG 251573
|| | || |||||| | ||||| || || ||
Sbjct 66614 CGCGACCGACCCTCAGTCGGCTGGCGGGTCAG 66583
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471773944510155
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |