Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1972 105 6e-18 seq2283 89.7 4e-13 >seq1972 Length=108299 Score = 105 bits (116), Expect = 6e-18 Identities = 192/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 34351 ACAAACTTGCGGATGAAACCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCG 34410 || |||||| |||||||| | | ||||||| | ||| || ||||| || ||| Sbjct 48849 ACGAACTTGACAATGAAACCGTAGACGTGGTCCTGCAGCTTCTTGGTATCGTGCGAACCG 48790 Query 34411 TTGACGATGAATCGTTCGTTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCG 34470 |||| ||| | || || | | || | | || || || || |||||| | || Sbjct 48789 TTGATGATCCAGCGGTCATCCGGGGGGTCAATGTTGGTCTGGGCTCCAAGCTCGAAACCA 48730 Query 34471 AAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTG 34530 |||||||| || ||| | | ||||| | || | || ||||| | | || |||| Sbjct 48729 AAGTACTTGATCAGGTGAGCACCGGGACGAGCCAGAGACTGGGCGACGGCCGACAGGTTG 48670 Query 34531 ACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATT 34590 || | |||||||||||| || || ||||| ||||||| ||||| | ||| ||||| Sbjct 48669 ACCACGACAGTCTTGATACCATTACCCTTGCCTTCGATCTTGGTTTGAAGGCGGGGCATC 48610 Query 34591 TTGTAGCGGTAGAACGCGTCCGCCACATTGCGGTTAACGTT 34631 ||||| ||||||||| ||| | | || | |||||||||| Sbjct 48609 TTGTACCGGTAGAACTGGTCGGTGATATCGGGGTTAACGTT 48569 >seq2283 Length=86879 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||| ||| | |||||||| ||||| || ||||| ||| | Sbjct 40884 ATGCAAATCTTCGTCAAGACTCTTACCGGCAAGACCATCACTCTCGAAGTCGAGTCGTCG 40943 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || || ||||| ||||| || || | ||| ||| || Sbjct 40944 GATACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAG 41003 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || |||| |||||||| ||||||||||||| | | || || | || |||||| Sbjct 41004 CAGCGTCTGATTTTCGCGGGTAAGCAGCTGGAGGATGGCCGTACCCTGTCTGACTACAAC 41063 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || || || || ||||| | ||| |||| Sbjct 41064 ATCCAGAAGGAGTCTACTCTTCACCTGGT 41092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412829952061295