Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1092 170 3e-36 seq1750 143 4e-28 seq1595 123 4e-22 seq1590 116 6e-20 seq2006 104 4e-16 seq1155 102 1e-15 seq1249 89.7 8e-12 >seq1092 Length=189081 Score = 170 bits (188), Expect = 3e-36 Identities = 237/330 (72%), Gaps = 9/330 (3%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| |||| |||||| |||| |||||||||||||| |||||||| Sbjct 137258 CCCTCGTCGCGGGAAATCAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACCGCGCTTG 137317 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 ||||||||||||| | || ||||||||| |||||||| ||||||||||||||| Sbjct 137318 CGCAGCCAAAAGATGGAAGCAAAGGCGCCCGAGAAGAAGATGCCTTCGACGGCGGCAAAG 137377 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTG---ATCCACTTCATCGCC 794517 | || || || | |||||| ||| | ||| | || | |||||||| | ||| Sbjct 137378 GCCACCAGACGTTGGGCAAA--GGTCGA----CTCGTGGTCGGCAATCCACTTGAGGGCC 137431 Query 794518 CACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTC 794577 || || ||||| | | |||| | || || |||||| ||| |||| | | Sbjct 137432 CAGTCGGCCTTGCGGCGGATGCAGGGAATAGTATCAATGGCGTTAAACAGGTAGCTGCGC 137491 Query 794578 TCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTT 794637 | | | || ||||||| ||| ||||| || || |||||||| ||||| ||||||||||| Sbjct 137492 TGGGCGGGCTCCTTGATGTACGTGTCAATCAGCAGCGAGTATGTCTCGGAGTGGATGTTC 137551 Query 794638 TCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 || || |||||| ||||| || |||||| Sbjct 137552 TCCATCATGATCTGAAAGCCGTAGAAGCAG 137581 Score = 132 bits (146), Expect = 8e-25 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 || ||||| || ||| |||||| |||||||||||||| |||||||||| |||||| Sbjct 136952 TAGTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTCTCCATG 137011 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGG 794027 | || ||||||| | ||||| ||| ||| ||||| | | ||||| ||| Sbjct 137012 AAGTCAAAGGGGTTGGTGGAGCGGTAGACCTTTTCGTTGCCGAGGGCGACCAGCAGACGG 137071 Query 794028 TCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACG 794087 ||||| || || ||||||||||| ||| ||| ||||||||||||||| || || | Sbjct 137072 TCGGCAACAAACTCAATGTACTGCTTCATCAGGTCGGCGTTCATGCCGAGCAGAGCGCAG 137131 Query 794088 GGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140 ||||| | ||| | | ||||| || || || |||| || ||| ||||||| Sbjct 137132 GGCAGGGCGTCGGTCAAGAACTCCTTTTCAATGGCGACAGCGTCGGTGATGAT 137184 >seq1750 Length=138661 Score = 143 bits (158), Expect = 4e-28 Identities = 335/504 (66%), Gaps = 15/504 (3%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || ||||||||||||||| || |||| ||| || ||||| |||||||| | || |||||| Sbjct 35439 GCCCTGGTCGACATAGCGGGCAGTGTTGTTGAACACGCGCAGCATGGGGATAATGCCGTT 35380 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 ||| |||||||| || || | ||| | ||| | |||||| | ||| | | Sbjct 35379 GGAGGTACCGTTGGTACCAGCAATGTACGAGCCAGTGGCGCGGATACGGTGAACATTGAG 35320 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 |||||| || || ||| |||||| || | || || | || || || ||||| ||||| Sbjct 35319 GCCGATACCACCAGCCATCTTGGAAATCATAGCACAAGTCTTGAGAGTATCGTAAATGCC 35260 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 || |||||||| |||||||||| | ||||||||| || || || | | | || Sbjct 35259 TTCAATCGAGTCCTCCTTCATGTCAACCAGAAAGCAAGATGACAGCTGGGCCTGAGGAGT 35200 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836 || || ||||| || ||||||| || || | ||| |||||| | ||| Sbjct 35199 ACCAGCGTTGAACAGAGTGGGCGAGGCGTGAGTAAAGAACTTGCTCGACATGAGGTTGTA 35140 Query 2073837 GGTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGC 2073896 || | | ||||| ||| ||| || | | ||| || ||| | || Sbjct 35139 CGTCTCAATGACGCG---------GTC---GAC-TCTGTCACCCC--AGATGCCAACAGC 35095 Query 2073897 GACGCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTA 2073956 || ||||| ||||||| |||||| |||||||| | | || || ||| |||||| Sbjct 35094 CACACGCATAATCATGTGCTGGGGACGCTCGACAATCTTGCCGTCCAACTTCAGCAGGTA 35035 Query 2073957 GGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGAT 2074016 || || ||||||| | |||||||||| |||| | ||| || |||| || Sbjct 35034 CGAACGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTAAAGTCACGATCGTACACAAT 34975 Query 2074017 GGCGGCGTCGAGGGCCTCCTTGTG 2074040 ||| | ||| || | |||||||| Sbjct 34974 GGCAGAGTCCAGCTCATCCTTGTG 34951 Score = 95.1 bits (104), Expect = 2e-13 Identities = 152/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 2070040 GACGCCGTCGCCGCCGCATGGTAGATCGTCTCAAAGATGGTGCG-GTTGAGGCGACGCGC 2070098 ||||||||| || || ||||| || ||||||||||| || | |||||| || || Sbjct 36203 GACGCCGTCAGGGCAGCGTGGTAAATAGTCTCAAAGATC-TGAGTGTTGAGCTTGCGAGC 36145 Query 2070099 GCCGGCGCTCTCCCACGGCAGGTCCATCATGGCAAAC--GCGTCGGCCAGGCCCTGCACG 2070156 |||| ||| |||||| | | | | |||| || || ||||| ||||| || Sbjct 36144 CTCGGCCGACTCAAACGGCA--TACGTAGAGCCAAAAAGGCATCAGCCAGACCCTGGACA 36087 Query 2070157 CCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGG 2070216 || ||||| || || |||||||||| ||| || | ||||||||||| |||||||| Sbjct 36086 CCAACGCCAATAGGACGGTGGCGCATGTTGCTGTTGTGTGCCTCGGGCACAGGGTAGTGA 36027 Query 2070217 TTGATGTCGATCACGCGGTTGAGGTTGGCCACCA 2070250 |||| || || | |||||| || ||| ||||| Sbjct 36026 TTGACATCAATGATGCGGTTCAGATTGCGCACCA 35993 >seq1595 Length=166483 Score = 123 bits (136), Expect = 4e-22 Identities = 182/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 2019182 GAAAAGAATCGACCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTG 2019241 ||||| | || || || | ||||||||||||| |||| |||||||| || ||||||| Sbjct 48147 GAAAAAAGTCACTCTCCCCCACGGCCGCCACAAGCTGATTATCCTCGACGAAGCCGACTC 48088 Query 2019242 CCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGAC 2019301 | || || | ||||| || ||||| || || ||||||| ||| ||||||| || Sbjct 48087 GATGACATCTGGTGCCCAACAAGCCCTGCGCCGCACAATGGAAATTTACTCCAACACCAC 48028 Query 2019302 GCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTG 2019361 || ||||| | || |||||| ||| | | |||| ||| | || ||| |||||| Sbjct 48027 CCGCTTTGCCTTTGCATGCAACCAGTCCAACAAGATCATTGAACCGCTGCAGTCCCGTTG 47968 Query 2019362 CGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGAT 2019421 ||| || |||| | ||||| || || |||| ||| | | | || ||| | |||| Sbjct 47967 CGCTATTCTGCGGTACGCGCGTCTGACAGACGAACAGGTGGTCAAACGGTTGCTCCAGAT 47908 Query 2019422 TATCGACGCCGAAAAGGT 2019439 ||||| || |||||||| Sbjct 47907 CATCGAGGCAGAAAAGGT 47890 >seq1590 Length=8670 Score = 116 bits (128), Expect = 6e-20 Identities = 88/104 (85%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||| ||| | ||||||||||| || |||||| | || |||||||||||||||||| | | Sbjct 1000 CCAATTACTTGGACATCAAGCCTCTGCTCGATGTTGGCTGCAAGACCGTGGCCAACATGA 1059 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATC 2035754 | ||||||||||| ||||| || ||||||||||| || |||||| Sbjct 1060 TTAAGGGCAAGTCCCCCGAAGAGATCCGCAAGACATTCAACATC 1103 >seq2006 Length=104922 Score = 104 bits (114), Expect = 4e-16 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| |||||||||||||| || ||||||||| ||||||| || || ||| Sbjct 95416 GTACTTGGTGACCGCCTTGGTACCCTCAGAAACGGCGTGCTTGGCCAGCTCACCAGGCAG 95475 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTC 1485557 |||||||||||| |||||||||||| Sbjct 95476 GATCAGGCGCACACTGGTCTGGATCTC 95502 >seq1155 Length=43631 Score = 102 bits (112), Expect = 1e-15 Identities = 131/180 (73%), Gaps = 3/180 (2%) Strand=Plus/Minus Query 2411412 GCTCATCTTGCCGTCCTTGGTGAGGCCCGGCACCAGCGGGTTGAGCAGGTGGATGCGCTT 2411471 ||||||||||||| | | || || ||||||| ||||| | ||||||| || || Sbjct 32181 GCTCATCTTGCCGCCA---GACAGACCAGGCACCATGGGGTTCATCAGGTGGCAACGGTT 32125 Query 2411472 GCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCAAAGGCAAAGATCTTGCGCTGGTCGCG 2411531 | |||||||| |||| ||| ||| | | ||||||||||||||||||| | Sbjct 32124 CTTGAAGCCCAGCTTGGGCATAGCGTCATGCGACAGGCCAAAGATCTTGCGCTGGTCCAG 32065 Query 2411532 CCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTA 2411591 |||||||||| ||| || || || |||| || |||||| || |||||| |||||||| Sbjct 32064 ACCGCCAAACTCGGCATCAACATCCAGGTACTCCTCGTCCAGTAGCTGCATCAGCGGGTA 32005 >seq1249 Length=41204 Score = 89.7 bits (98), Expect = 8e-12 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 2175076 TGCCGTCGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGT 2175135 |||||||||||||||| || || || || || |||| ||| | ||||||| ||| |||| Sbjct 35737 TGCCGTCGGTGCCGTTCTTGAAGCCCACGGGGAACGACAGACCAGACGCCAGTTCACGGT 35796 Query 2175136 GCACCTGGCTCTCGGTGGTGCGCGCGCCCACGGCGCC 2175172 ||| ||| |||||||||||||||||| | ||||| Sbjct 35797 GCAGCTGCGACTCGGTGGTGCGCGCGCCAATAGCGCC 35833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916000142891285