Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1473 114 8e-21 seq2283 113 3e-20 seq335 109 4e-19 >seq1473 Length=183801 Score = 114 bits (126), Expect = 8e-21 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||||||||| ||||| || ||| |||| |||| || || ||||| || || |||| Sbjct 105034 CCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 105093 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || |||||||| | || | ||||||||||| | || || |||||| Sbjct 105094 TCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 105153 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || || |||||| || | ||| |||||||| ||||| |||||||| || | Sbjct 105154 CGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGA 105213 Query 34968 A 34968 | Sbjct 105214 A 105214 >seq2283 Length=86879 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||||| || ||||||||| ||||| ||||| || ||| | || |||| Sbjct 41095 AGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCC 41036 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || ||||| ||||| || |||||||| | || | ||||||||||| Sbjct 41035 TCCAGCTGCTTACCCGCGAAAATCAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCC 40976 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | |||||| || | || |||||| Sbjct 40975 TGGATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCGACTTCGAGAGTGATGGTC 40916 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| || ||||| ||||| Sbjct 40915 TTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 40884 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||||| || ||||||||| ||||| ||||| || ||| | || | || Sbjct 40867 AGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTCC 40808 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| |||||||| || |||||||| || |||||||| | || | |||||||| || Sbjct 40807 TCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTATCC 40748 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | |||||| || | || |||||| Sbjct 40747 TGGATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCGACTTCGAGAGTGATGGTC 40688 Query 34946 TTTCCCGTGAGGGTCTTTAC 34965 || || ||||||||||| || Sbjct 40687 TTGCCGGTGAGGGTCTTGAC 40668 Score = 98.7 bits (108), Expect = 6e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | ||| ||||||||| ||||||||||| || ||| | || | || Sbjct 40583 AGAACCAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCGGACAGGGTACGGCCGTCC 40524 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| |||||||| || |||||||| || |||||||| | || | ||||||||||| Sbjct 40523 TCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCC 40464 Query 34886 TTTATTTTTTGTTTGAC 34902 | || ||| ||||| Sbjct 40463 TGGATCTTTGACTTGAC 40447 >seq335 Length=221524 Score = 109 bits (120), Expect = 4e-19 Identities = 142/194 (73%), Gaps = 8/194 (4%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || || |||| |||| ||||| ||||| || ||||||| Sbjct 117049 CCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 117108 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || |||||||| | || | ||||||||||| | || || ||||| || Sbjct 117109 TCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGAC--AT- 117165 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| || || ||| || || | ||| || ||||| ||||| |||||||| Sbjct 117166 -TGTCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTG 117224 Query 34964 ACAAAGATCTGCAT 34977 || || |||||||| Sbjct 117225 ACGAAAATCTGCAT 117238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325683610882985