Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq1092 138 1e-27 >seq1092 Length=189081 Score = 138 bits (152), Expect = 1e-27 Identities = 312/461 (68%), Gaps = 11/461 (2%) Strand=Plus/Minus Query 50274 ACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGC 50333 || || ||| ||||| | ||||| |||||| || ||||| | || || || || | Sbjct 137400 ACCTTTGCCCAACGTCTGGTGGCCTTTGCCGCCGTCGAAGGCATCTTCTTCTCGGGCGCC 137341 Query 50334 TTTGCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAAC 50393 ||||| |||| |||| | | || | ||||||||||| || ||| |||| Sbjct 137340 TTTGCTTCCATCTTTTGGCTGCGCAAGCGCGGTCTCATGCCCGGCCTGACCTTTTCCAAC 137281 Query 50394 GAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTGTTTGTACTACAATACG 50453 ||| ||||||| |||||||| || |||||||||||||||| || || || | || Sbjct 137280 GAGCTGATTTCCCGCGACGAGGGCCTGCACACAGACTTTGCCTGCCTGCTCTTCT---CG 137224 Query 50454 CGCGTAAATGAAAAATTATCAT-ACGAAACA-ATTTTGGACATGTTCAAAGAAGCCGTCG 50511 | | | || || || | ||| | ||| ||| || ||| || || |||| Sbjct 137223 CACCTCAAC--AACCGCCCCAGCAAGAAGCTGATTGAGGAAATCATCACCGACGCTGTCG 137166 Query 50512 ACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATGAACGCAG 50571 ||| ||||| ||||| || || ||||| | ||| || || | ||||||||||| | Sbjct 137165 CCATTGAAAAGGAGTTCTTGACCGACGCCCTGCCCTGCGCTCTGCTCGGCATGAACGCCG 137106 Query 50572 ACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAGCTGGGACAAC 50631 || ||||| ||||||||||||||||||| ||| | || || | || || ||| Sbjct 137105 ACCTGATGAAGCAGTACATTGAGTTTGTTGCCGACCGTCTGCTGGTCGCCCTCGG-CAA- 137048 Query 50632 CGAAATACTATAATGCAC--GTAACCCCTTTCCGTTTATGAATAACATATCGTTGGAGGG 50689 ||||| | || || | ||||||||| || ||| | ||||| ||| | | || Sbjct 137047 CGAAAAGGTCTACCGCTCCACCAACCCCTTTGACTTCATGGAGAACATCTCGCTCGGCGG 136988 Query 50690 CAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATACAAAA 50730 ||| || ||||| ||||| | ||||| ||||| ||| ||| Sbjct 136987 CAAGACCAACTTCTTCGAGAAGCGTGTCGGCGACTACCAAA 136947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488529862758000