Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2283 95.1 3e-14 >seq2283 Length=86879 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| || || || |||||| | ||||| || || || || | || Sbjct 40670 CAAGACCCTCACCGGCAAGACCATCACTCTCGAAGTCGAGTCGTCGGATACCATTGACAA 40729 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| || || || || || ||| |||||| || | || ||||| Sbjct 40730 CGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCTCCGGACCAGCAGCGTCTGATCTT 40789 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || ||||||||| |||| || || | || || | || |||||| ||||||| ||||| Sbjct 40790 TGCTGGAAAGCAGCTGGAGGACGGCCGTACCCTGTCTGACTACAACATCCAGAAGGAGTC 40849 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||||||| ||| | | ||||| Sbjct 40850 TACTCTTCACCTGGTTCTCCGCCTTCG 40876 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || || || || || |||||| | ||||| || || || || | || Sbjct 40898 CAAGACTCTTACCGGCAAGACCATCACTCTCGAAGTCGAGTCGTCGGATACCATTGACAA 40957 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| || || || || || ||| |||||| || | || || || Sbjct 40958 CGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGTCTGATTTT 41017 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||| |||| ||||| | || || | || |||||| ||||||| ||||| Sbjct 41018 CGCGGGTAAGCAGCTGGAGGATGGCCGTACCCTGTCTGACTACAACATCCAGAAGGAGTC 41077 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||||||| ||| | | ||||| Sbjct 41078 TACTCTTCACCTGGTTCTCCGCCTTCG 41104 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | | ||| ||||||||||||||||| ||||||| || ||||||| || || Sbjct 40876 CGAAGGCGGAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTA 40817 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | || || |||||||||||||| || ||||| || || || || Sbjct 40816 CGGCCGTCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTG 40773 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | | ||| ||||||||||||||||| ||||||| || ||||||| || || Sbjct 41104 CGAAGGCGGAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTA 41045 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | ||||| ||||||||||| || ||||| || || || || || Sbjct 41044 CGGCCATCCTCCAGCTGCTTACCCGCGAAAATCAGACGCTGCTG 41001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181785746087115