Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1092 116 4e-21 seq2283 86.0 6e-12 >seq1092 Length=189081 Score = 116 bits (128), Expect = 4e-21 Identities = 332/502 (66%), Gaps = 19/502 (4%) Strand=Plus/Minus Query 46776 AAGGCCCAGTGGGCCATGAAGTGGAT---CGAGAGCGAGACCGCCACGCTGGCCGAGCGC 46832 |||||| | |||||| | |||||||| ||| |||| | || | ||| | || Sbjct 137442 AAGGCCGACTGGGCCCTCAAGTGGATTGCCGACCACGAGTCGACCT---TTGCCCAACGT 137386 Query 46833 ATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTT 46892 ||||||| || || ||||||||| | || || |||||| ||||| |||| ||| Sbjct 137385 CTGGTGGCCTTTGCCGCCGTCGAAGGCATCTTCTTCTCGGGCGCCTTTGCTTCCATCTTT 137326 Query 46893 TACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGC 46952 | | | || | ||||| |||||||| || |||||| |||| || ||| Sbjct 137325 TGGCTGCGCAAGCGCGGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTGATTTCCCGC 137266 Query 46953 GACGAAGGACTACACACGGACTTTGCGTGTCT-CTATTACAAGACGCGCGTGAATGAGAA 47011 ||||| || || ||||| |||||||| || || || || ||| | | || | Sbjct 137265 GACGAGGGCCTGCACACAGACTTTGCCTGCCTGCTCTTCT----CGCACCTCAACAACCG 137210 Query 47012 ATTAAACTCGGACACGATCCTGAGCATGT--TTAGGGAGGCGGTGAGCATCGAAAAGGAG 47069 | | | | ||| |||| | | | | || || || ||| ||||||||| Sbjct 137209 CCCCAGCAAGAAGCTGAT--TGAGGAAATCATCACCGACGCTGTCGCCATTGAAAAGGAG 137152 Query 47070 TTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAA 47129 || || || | || |||||| ||| |||| ||||||||||| | ||| | Sbjct 137151 TTCTTGACCGACGCCCTGCCCTGCGCTCTGCTCGGCATGAACGCCGACCTGATGAAGCAG 137092 Query 47130 TATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAAT 47189 || ||||||||||| || || |||||| |||| ||||| ||| ||||| | || Sbjct 137091 TACATTGAGTTTGTTGCCGACCGTCTGCTGGTCGCCCTCGG-CAA-CGAAAAGGTCTACC 137034 Query 47190 GCTC--GTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTT 47247 |||| || || ||||| || ||| | ||||| ||||||| ||||| ||||| || | Sbjct 137033 GCTCCACCAACCCCTTTGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACCAACTTCT 136974 Query 47248 TCGAGAAACGAGTCGGAGAGTA 47269 ||||||| || ||||| || || Sbjct 136973 TCGAGAAGCGTGTCGGCGACTA 136952 >seq2283 Length=86879 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| ||||| || | | | ||||| || || |||||||||||| || ||| Sbjct 41333 ACGCAGACGCAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 41274 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||| || ||||| ||||| | | || || ||||| || || ||||| ||||| Sbjct 41273 ACGGCCATCCTCCAGCTGCTTACCCGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATGCC 41214 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || ||||| || || |||| | || | ||||||| | ||||| || | Sbjct 41213 CTCCTTATCCTGGATCTTCGACTTCACATTGTCGATGGTATCGGAGGATTCCACCTCAAG 41154 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || || ||||| || | ||| || ||||| Sbjct 41153 AGTGATTGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 41112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476597408063400