Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1092 233 3e-55 seq1595 100 4e-15 >seq1092 Length=189081 Score = 233 bits (258), Expect = 3e-55 Identities = 364/509 (72%), Gaps = 16/509 (3%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| |||||||||||||| ||||| ||||| ||||||||| | |||| Sbjct 137794 GATCTGGCAAATGTAC-AAAAAGGCCGAGGCGTCCTTCTGGACTGCCGAGGAGATTGACC 137736 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 | | ||| | | ||||| ||| ||| | | ||||| | |||||| Sbjct 137735 TGTCCAAGGACCTGCACGACTGGAACAACCGCATGAACAAGGACGAAAAGTACTTCATCT 137676 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||| || ||||| ||| ||||| || ||||| || ||||||||||| || Sbjct 137675 CGCACGTGCTGGCCTTCTTT-GCCGCGTCGGACGGCATTGTCAACGAGAACCTGGTCGAG 137617 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | |||||||| | || ||||| || | || ||||| || |||||| Sbjct 137616 CGCTTCTCGGGCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTTCAGATCATG 137557 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||||||||| || || |||||||| ||||| ||||| ||| ||||||| || Sbjct 137556 ATGGAGAACATCCACTCCGAGACATACTCGCTGCTGATTGACACGTACATCAAGGAGCCC 137497 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 | | || | |||| ||| |||||| || || | || | | | |||||| Sbjct 137496 GCCCAGCGCAGCTACCTGTTTAACGCCATTGATACTATTCCCTGCATCCGCCGCAAGGCC 137437 Query 1456132 GACTGGGCGATGAAGTGGAT---CAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCG 1456188 |||||||| | |||||||| | || | ||| ||||| ||||||| | || || | Sbjct 137436 GACTGGGCCCTCAAGTGGATTGCCGACCACGAG----TCGAC-CTTTGCCCAACGTCTGG 137382 Query 1456189 TCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGC-GCCATCTTTTGG 1456246 | | |||||||| |||||| |||||||| ||||||||| | | ||| ||||||||||| Sbjct 137381 TGGCCTTTGCCGCCGTCGAAGGCATCTTCTTCTCGGGC-GCCTTTGCTTCCATCTTTTGG 137323 Query 1456247 CTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 || |||||||| ||||||||||| || Sbjct 137322 CTGCGCAAGCGCGGTCTCATGCCCGGCCT 137294 Score = 122 bits (134), Expect = 1e-21 Identities = 226/325 (70%), Gaps = 10/325 (3%) Strand=Plus/Minus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACG 1456511 ||||| ||||||||||| ||||||| | || | | ||||||| | | | | | Sbjct 137255 TGCACACAGACTTTGCCTGCCTGCTCTTCTCG---CACCTCAACAACCGCCCCAGCAAGA 137199 Query 1456512 TGCCCA---AGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGT 1456568 || | || | |||||| ||| || |||| || || || ||||| | | ||| Sbjct 137198 AGCTGATTGAGGAAATCATCACCGACGCTGTCGCCATTGAAAAGGAGTTCTTGACCGACG 137139 Query 1456569 CGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTT 1456628 | ||||| || || |||||||||||||| | || ||| ||||||||||| ||| Sbjct 137138 CCCTGCCCTGCGCTCTGCTCGGCATGAACGCCGAC-CTGATGAAGCAGTACATTGAGTTT 137080 Query 1456629 TGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACC 1456688 || |||||||| ||||| | || |||||| || | ||| |||||| | |||||| Sbjct 137079 -GTTGCCGACCGTCTGCTGGTCGCCCTCGGCAACGAA-AAGGTCTACCGCTCCACCAACC 137022 Query 1456689 CGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG 1456748 | || | |||||| |||||||||| |||||||||||||| |||||| || | Sbjct 137021 CCTTTGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGTG 136962 Query 1456749 T-GGCGAGTACGCCAAGGCCGGCGT 1456772 | ||||| ||| |||||||| || Sbjct 136961 TCGGCGACTACCAAAAGGCCGGTGT 136937 >seq1595 Length=166483 Score = 100 bits (110), Expect = 4e-15 Identities = 198/293 (68%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 332810 ACCTTTTCGGCGGCGACAATCTCGCGCAGGCGACCGGCGATTTGGGCGTCAGTGAGGCGC 332869 |||||||| || ||| |||| | ||| || | | | || |||| || || ||| Sbjct 47890 ACCTTTTCTGCCTCGATGATCTGGAGCAACCGTTTGACCACCTGTTCGTCTGTCAGACGC 47949 Query 332870 ACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTG 332929 | | ||||| || || |||||| |||||| | || |||| | | ||| |||| Sbjct 47950 GCGTACCGCAGAATAGCGCAACGGGACTGCAGCGGTTCAATGATCTTGTTGGACTGGTTG 48009 Query 332930 CAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGT 332989 || || | |||||| || || || |||| | ||||||| || || ||||| ||| Sbjct 48010 CATGCAAAGGCAAAGCGGGTGGTGTTGGAGTAAATTTCCATTGTGCGGCGCAGGGCTTGT 48069 Query 332990 TGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGC 333049 ||||| | | || | ||||||| ||||||||||| || | ||||||||| ||||| Sbjct 48070 TGGGCACCAGATGTCATCGAGTCGGCTTCGTCGAGGATAATCAGCTTGTGGCGGCCGTGG 48129 Query 333050 GGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTC 333102 || ||| || ||||| ||| | ||||| |||||||| ||||| Sbjct 48130 GGGAGAGTGACTTTTTTCTGGGCAAAGGCCTTGATTCGGTTGCGCACAACGTC 48182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177587913995030