Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1750 111 2e-19 seq1092 96.9 5e-15 >seq1750 Length=138661 Score = 111 bits (122), Expect = 2e-19 Identities = 449/706 (64%), Gaps = 10/706 (1%) Strand=Plus/Minus Query 69538 TCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACT 69597 ||| ||| ||||| || || || |||||||||| | ||| || | | || || Sbjct 35654 TCAGCCAGGCCAGGGCACTCGTTGGGACACATCAGGGTCCAGTTCTCGTTCTTCTCGACA 35595 Query 69598 CGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCT 69657 || ||||| || | ||||||||||| ||||||| || || || | || | || Sbjct 35594 CGCTTCATGAACATGTCGGGAATCCACAGAGCTAGGAACAGGTCACGGGCGCGGACCTCC 35535 Query 69658 TCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCT 69717 || || || ||| || || || || ||||| | | ||| | ||||| || || Sbjct 35534 TCCTTACCATGATTCTTGCGCAGGTCAAGGAACTCAAACACATCGGCGTGCCACGGCTCC 35475 Query 69718 AGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTG 69777 || || || || | | || || || || || || ||||| || | || | ||||||| Sbjct 35474 AGGTAAATGGCAAAAGCACCAGGGCGCTTGTTGCCGCCCTGGTCGACATAGCGGGCAGTG 35415 Query 69778 TTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATA 69837 || || | || | |||||| || ||||| || || || |||| || || |||| ||| Sbjct 35414 TTGTTGAACACGCGCAGCATGGGGATAATGCCGTTGGAGGTACCGTTGGTACCAGCAATG 35355 Query 69838 TAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAG 69897 || || | ||||| ||| || | || || || || || ||||| || || Sbjct 35354 TACGAGCCAGTGGCGCGGATACGGTGAACATTGAGGCCGATACCACCAGCCATCTTGGAA 35295 Query 69898 ATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTA 69957 || | ||||||| || | || || || || || || || || || |||||| | Sbjct 35294 ATCATAGCACAAGTCTTGAGAGTATCGTAAATGCCTTCAATCGAGTCCTCCTTCATGTCA 35235 Query 69958 AGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGAT 70017 | ||||| || |||| || || ||| || || || || | || || || Sbjct 35234 ACCAGAAAGCAAGATGACAGCTGGGCCTGAGGAGTACCAGCGTTGAACAGAGTGGGCGAG 35175 Query 70018 GCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAAT-----AGCTGATTCTA 70072 |||||||| || | || || | || ||||| || ||||| | || ||| Sbjct 35174 GCGTGAGTAAAGAACTTGCTCGACATGAGGTTGTACGTCTCAATGACGCGGTCGACTCTG 35115 Query 70073 TATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCG 70132 | ||| | |||| || | || |||||||| | ||| ||||| || || || || Sbjct 35114 TCACCC-CAGATG----CCAACAGCCACACGCATAATCATGTGCTGGGGACGCTCGACAA 35060 Query 70133 TTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGT 70192 | || | | |||| |||||| || ||||| || || || ||||| || | || Sbjct 35059 TCTTGCCGTCCAACTTCAGCAGGTACGAACGCTCCAGGGTCTTGAAGCCAAAGTACTGGT 35000 Query 70193 ATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTT 70238 | |||||| | ||||| | ||| |||| | || | |||||| Sbjct 34999 AGTTAAAGTCACGATCGTACACAATGGCAGAGTCCAGCTCATCCTT 34954 >seq1092 Length=189081 Score = 96.9 bits (106), Expect = 5e-15 Identities = 358/559 (64%), Gaps = 8/559 (1%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| ||||| || |||||||| || | ||| | ||||| ||||| || || Sbjct 137236 GCAGGCAAAGTCTGTGTGCAGGCCCTCGTCGCGGGAAATCAGCTCGTTGGAAAAGGTCAG 137295 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 || ||||| ||||| ||||| |||||||| |||| |||||| | || || ||||| Sbjct 137296 GCCGGGCATGAGACCGCGCTTGCGCAGCCAAAAGATGGAAGCAAAGGCGCCCGAGAAGAA 137355 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---G 39792 ||||||||| || || ||||| || || || | | | | | | || | | Sbjct 137356 GATGCCTTCGACGGCGGCAAAGGCCACCAGACGTTGGGCAAAGGTCGACTCGTGGTCGGC 137415 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 |||||||| | ||||| || || || | || || || || || || || || Sbjct 137416 AATCCACTTGAGGGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTATCAATGGCGTT 137475 Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 ||| || || | | || || | || || || || | ||| || | Sbjct 137476 AAACAGGTAGCTGCGCTGGGCGGGCTCCTTGATGTACGTGTCAATCAGCAGCGAGTATGT 137535 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972 || || |||||||| || ||| |||||||| ||||| || || | || || | || Sbjct 137536 CTCGGAGTGGATGTTCTCCATCATGATCTGAAAGCCGTAGAAGCAGCGGGCCTCGGGGAT 137595 Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032 || ||||| | || | || ||| || || || || || || || ||||| Sbjct 137596 CTGGACCTCGCCCGAGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGACGCGGC 137655 Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT----TTATTCC 40088 ||| || |||| || || || || || ||||| || ||| || || |||| Sbjct 137656 AAAGAAGGCCAGCACGTGCGAGATGAAGTACTTTTCGTC-CTTGTTCATGCGGTTGTTCC 137714 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 |||| | | || || || | || | || || || ||||| || |||||||| |||| Sbjct 137715 AGTCGTGCAGGTCCTTGGACAGGTCAATCTCCTCGGCAGTCCAGAAGGACGCCTCGGCCT 137774 Query 40149 TTTTGTACATGTTCCATAT 40167 |||||||||| | ||| || Sbjct 137775 TTTTGTACATTTGCCAGAT 137793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686888922576600