Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1750 185 1e-41 seq1654 91.5 2e-13 >seq1750 Length=138661 Score = 185 bits (204), Expect = 1e-41 Identities = 898/1406 (64%), Gaps = 53/1406 (4%) Strand=Plus/Minus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||| ||||| | ||||| || |||||||| ||||| || |||| || || | ||| Sbjct 36451 GGTAAATGTTGGAAGTGTACGGCTCAAAGCACTCATTGTTGCCCAGAATCTGCGACGTGC 36392 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 ||| || ||||| || |||| || || ||| || | ||| | || |||||| | | Sbjct 36391 TGGCCGTAGGCATGGGAGCCAGCAGCAGCGAGTTGCGCACACCGTGCTGCTTGATCTGCT 36332 Query 110826 CCTTGAGAACATCCCAGTCGTAGTTGAG-CTTGGTTTCACCTTCCCACATGTCAAACTGA 110884 ||||||| | ||||||| || | || || | || |||| ||||||||||||| Sbjct 36331 CCTTGAGCGAAGCCCAGTCCCAGAGGTCACTGGGAGTGACATTCC-ACATGTCAAACTGC 36273 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 || | || || || | || |||||||| |||| || | || | | | || Sbjct 36272 AGGATGCCCTGCGAAACAGGCGAACCCTCGTAGGTCGAGTACGTGCCCTCCTCCTTGGCA 36213 Query 110945 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 111004 | || | |||| ||||| ||||| || || || |||||||| ||| || | | Sbjct 36212 ATCTCCATGGACGCCGTCAGGGCAGCGTGGTAAATAGTCTCAAAGATCTGAGTGTTGAGC 36153 Query 111005 TCCTTGGCTTCATCTGAATCAAATG-----CGTAGCGGCACAAAATAAATACATCCGCGA 111059 | || || | || ||||| | ||||| | || ||| |||| || | Sbjct 36152 TTGCGAGCCTCGGCCGACTCAAACGGCATACGTAGAGCCAAAAAGG-----CATCAGCCA 36098 Query 111060 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA- 111118 |||| || ||||| | |||||||| | ||| ||||| || || | || ||| Sbjct 36097 GACCCTGGACACCAACGCCAATAGGACGGTGGCGCATGTTGCTGTTGTGTGC---CTCGG 36041 Query 111119 --ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGA 111176 || || || ||| ||||||| ||||| ||||| || | ||| |||| Sbjct 36040 GCACAGGGTAGTGATTGACATCAATGATGCGGTTCAGATTGCGCACCACCACCTTGGTGA 35981 Query 111177 TTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG---ACATACTTTGGAA 111233 || || || || | | || | ||| |||| | | ||| || ||| | Sbjct 35980 CATCGTGCAGCTTCTGGAAGTCGTA---GCGGTTCTCGCTGTAGTCAACAAACGATGGCA 35924 Query 111234 GGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTT 111293 | || | || |||| ||||| ||||| |||||| | |||||| | ||| | Sbjct 35923 GCGCCAGCGAGGCCAGGTTGCACACAGCAACCTCATCAGGGGCACAGTACTCGATAATCT 35864 Query 111294 CTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGC 111353 | || || | |||||| || ||| || |||| |||||||||||| ||||| ||||| Sbjct 35863 CAGTGCACAGGTTGGAGCTGCGAATGGTACCCAGATTCTTTTGGTTGCTCTTGCGGTTGC 35804 Query 111354 ACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCT 111413 | |||||||| ||||| | || | || ||||| ||||| | | | ||| || | Sbjct 35803 AGTGGTCCTTGTACAGCATAAACGGGTTGCCAGTCTCGGTCTGGGCCTCCAAAATGGCAT 35744 Query 111414 TCCA-AACATCGGCGGCTGGTAC-AATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGT 111471 ||| | | || | | || | | | || || | || |||||| |||||||||| Sbjct 35743 ACCACAGCTTCTGGGCCTTGACCGACTGCCG--ACCACGGCCCTCCTTCTCGTACTTTTC 35686 Query 111472 GTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACA 111531 ||| || || ||||| ||||| || ||| | || || || || || ||||| Sbjct 35685 GTACAGAGCCTCAAATTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTGGGACA 35626 Query 111532 GAAAAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 111590 | || | ||| || | ||| ||| || ||||||||||| | ||| |||||||||| Sbjct 35625 CATCAGGGTCCAGTTCTCGTTCTT-CTCGACACGCTTCATGAACATGTCGGGAATCCACA 35567 Query 111591 GGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAA 111650 | | | || || || | || |||| || | ||| || || || | |||| Sbjct 35566 GAGCTAGGAACAGGTCACGGGCGCGGACCTCCTCCTTACCATGATTCTTGCGCAGGTCAA 35507 Query 111651 GGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC------CT 111704 ||||||| | | ||| |||||||| ||||| || || | || | || || || Sbjct 35506 GGAACTCAAACACATCGGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGGCGCT 35447 Query 111705 T-TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 111763 | | | ||||| || | |||||||| || ||| ||| || ||||| ||||| || Sbjct 35446 TGTTGCCGCCC----TGGTCGACATAGCGGGCAGTGTTGTTGAACACGCGCAGCATGGGG 35391 Query 111764 ATAATACCATCTGATTGACCATTTGTCCCCCGAA--TACGAGATTTATTGGCTCTCACAT 111821 ||||| || | || ||| || || || || |||||| | |||| | | | Sbjct 35390 ATAATGCCGTTGGAGGTACCGTTGGTACCAGCAATGTACGAG--CCAGTGGCGCGGATAC 35333 Query 111822 CATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAG 111881 || | | | || ||||| |||||| ||| || || ||||| | | |||| Sbjct 35332 GGTGAACATTGAGGCCGATACCACCAGCCATCTTGGAAATCATAGCACAAGTCTTGAGAG 35273 Query 111882 TTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCT 111941 | | || || || | || ||||||||||| || | | || |||||| |||| || Sbjct 35272 TATCGTAAATGCCTTCAATCGAGTCCTCCTTCATGTCAACCAGAAAGCAAGATGACAGCT 35213 Query 111942 GCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG- 111999 | || || || |||||||| ||||| || || || | |||||| | | | | |||| Sbjct 35212 G-GGCCTGAGGAGTACCAGCGTTGAACAGAGTGGGCGAGGCGTGA--GTAAAGAACTTGC 35156 Query 112000 -GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCT-TCCCCGTGGATGCCGATT 112057 ||||| || ||| ||||| | ||| || | ||| || || |||||| | Sbjct 35155 TCGACATGAGGTTGTACGTCTCAATGACGCGGTCGA-CTCTGTCACCCCAGATGCCAACA 35097 Query 112058 GCGACCCGCATGAACATGTACTGTGG 112083 || || ||||| | ||||| ||| || Sbjct 35096 GCCACACGCATAATCATGTGCTGGGG 35071 >seq1654 Length=5849 Score = 91.5 bits (100), Expect = 2e-13 Identities = 203/301 (67%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 || |||||||| ||||| |||| || || || ||| | ||| || | |||| || Sbjct 1857 GCGTCAATCTCGTCAATAAAGATGATGCACGGCGCATTCTTGCGTGCCGTGGCAAACAGG 1798 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCG--GCAGAGC 11747 || || |||| | || ||||| ||||||||||| ||||| | | | || || | Sbjct 1797 TCCCGCACCCGCGATGGGCCAACACCTACAAACATCTCGACAAACTCGGAGCCGCTGA-C 1739 Query 11748 ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 ||| | ||| || || || || || || |||| ||| || || |||||||||| Sbjct 1738 GCTGAA-GAACGGCACGCCCGACTCGCCTGCCGTGGCCTTGGCCAGCAGCGTCTTTCCCG 1680 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATC 11867 | || || ||||| |||| ||| || || ||||||||||| || | | | | Sbjct 1679 TTCCGGGAGGACCCGACAGAATGGCACCGCGTGGGATCTTGGCGCCCAGGCGCACAAACT 1620 Query 11868 TCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCC 11927 ||||||| | |||||| || | ||||| ||| | ||| | |||||| |||| || | Sbjct 1619 TCTCGGGCTTCTTGAGGAACTGCACAAACTCCATGATTTCCACCTTGGCCTCGTCCATGC 1560 Query 11928 C 11928 | Sbjct 1559 C 1559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628013826324000