Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1092 127 3e-24 >seq1092 Length=189081 Score = 127 bits (140), Expect = 3e-24 Identities = 523/815 (64%), Gaps = 21/815 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCT-GATATTCTCCAT 129786 ||||| || || ||||||||||||||||| ||||| ||| || ||| ||| |||||||| Sbjct 136952 TAGTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCG-CCGAGCGAGATGTTCTCCAT 137010 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGCTGGC-ACTCCAATCTGTTTGAG 129840 || ||||| ||||| | ||| | | | | || | | | | | || Sbjct 137011 GAAGTCAAAGGGGTTGGTGGAGCGGTAGACCTTTTCGTTGCCGAGGGCGACC------AG 137064 Query 129841 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG 129900 ||||| || | || |||||||||||| |||| |||| |||||| |||| || Sbjct 137065 CAGACGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGTCGGCGTTCATGCCGAGCAG 137124 Query 129901 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGAT 129960 || || || ||||| | |||| |||| |||||| | ||||| || | ||| Sbjct 137125 AGCGCAGGGCAGGGCGTCGGTCAAGAACTCCTTTTCAATGGCGACAGCGTCGGTGATGAT 137184 Query 129961 GGCGTGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAA 130020 | | ||| || | ||| || | ||| | | |||||| |||||| Sbjct 137185 TTCCTCAATCAGCTTCTTGCTGGGGCGGTTGTTGAGGTGCGAGAAGAGCAGGCAGGCAAA 137244 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 || ||| || |||||||| ||||| || || || || || ||| ||| || ||||| Sbjct 137245 GTCTGTGTGCAGGCCCTCGTCGCGGGAAATCAGCTCGTTGGAAAAGGTCAGGCCGGGCAT 137304 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 |||||| ||||| || ||| || || | | ||| | ||| ||||||||||| || || Sbjct 137305 GAGACCGCGCTTGCGCAGCCAAAAGATGGAAGCAAAGGCGCCCGAGAAGAAGATGCCTTC 137364 Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAAACCACT 130199 || || || || | ||||| | ||||||| || | | || ||| ||||| Sbjct 137365 GACGGCGGCAAAGGCCACCAGACGTTGGGCAAAGG-TCGACTCGTGGTCGGCAATCCACT 137423 Query 130200 TCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTT 130259 | | ||||| | ||||| ||| || || | || | || || | ||| || | Sbjct 137424 TGAGGGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTATCAATGGCGTTAAACAGGT 137483 Query 130260 CCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCAT 130319 | | | || || ||||||||| | || || || || ||||| ||| | Sbjct 137484 AGCTGCGCTGGGCGGGCTCCTTGATGTACGTGTCAATCAGCAGCGAGTATGTCTCGGAGT 137543 Query 130320 GGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACC 130378 ||| | | ||| || | |||| | ||||||| |||| || ||| ||||| ||| Sbjct 137544 GGATGTTCTCCATCAT-GATCTGAAAGCCGTAGAAGCAGCGGGCCTCGGGGATCTGGACC 137602 Query 130379 TCATCTGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAAC 130438 || | | || | | ||||| ||||| || || ||| | ||||| || Sbjct 137603 TCGCCCGAGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGACGCGGCAAAGAAG 137662 Query 130439 GCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCA 130495 ||||| | | | ||||| | || ||| | || ||||| || | |||||||||| Sbjct 137663 GCCAGCACGTGCGAGATGAAGTACTTTTCGTCCTTGTTCATGCGGTTGTTCCAGTCGTGC 137722 Query 130496 AGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 || ||||| || || || | |||||| |||||||| Sbjct 137723 AGGTCCTTGGACAGGTCAATCTCCTCGGCAGTCCA 137757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618417304031400