Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1750 208 9e-49 seq1654 95.1 1e-14 seq1092 86.0 7e-12 >seq1750 Length=138661 Score = 208 bits (230), Expect = 9e-49 Identities = 903/1404 (64%), Gaps = 53/1404 (4%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACA---TTGATTCT 104278 || ||| ||||| | ||||| ||||| | || || ||||| |||| | || Sbjct 35071 CCCCAGCACATGATTATGCGTGTGGCTGTTGGCATC--TGGGGT-GACAGAGTCGACCGC 35127 Query 104279 GTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCC 104336 ||| | ||||| ||| || ||||| |||| | | | | |||||| | || || | Sbjct 35128 GTCATTGAGACGTACAACCTCATGTCGAGCAAGTTCTTTAC--TCACGCCTCGCCCACTC 35185 Query 104337 TCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGG 104396 | ||||| |||||||| || |||| |||| |||||| || | | || |||| Sbjct 35186 TGTTCAACGCTGGTACTCCTCAGGCCCAGCTGTCATCTTGCTTTCTGGTTGACATGAAGG 35245 Query 104397 AGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGG 104456 ||||||| || | || || || | ||||| | | ||||| || || ||| || Sbjct 35246 AGGACTCGATTGAAGGCATTTACGATACTCTCAAGACTTGTGCTATGATTTCCAAGATGG 35305 Query 104457 CTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TTCGGGG 104514 |||| ||||| || | | | || | | | |||| | |||||| || || Sbjct 35306 CTGGTGGTATCGGCCTCAATGTTCACCGTATCCGCGCCACTGG--CTCGTACATTGCTGG 35363 Query 104515 GACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 104574 || || ||| || | || ||||| || ||||| ||||| || ||| ||| || || Sbjct 35364 TACCAACGGTACCTCCAACGGCATTATCCCCATGCTGCGCGTGTTCAACAACACTGCCCG 35423 Query 104575 CTATGTAAATCAAGCTGGGCGTCGA-AAG------GGATCTATCGCAGTCTATCTTGAGC 104627 |||||| | || ||||| | | ||| || || | || | || || |||| Sbjct 35424 CTATGTCGACCA----GGGCGGCAACAAGCGCCCTGGTGCTTTTGCCATTTACCTGGAGC 35479 Query 104628 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG 104687 | |||||||| ||| | | ||||||||||| |||| || || ||| | ||||||| Sbjct 35480 CGTGGCACGCCGATGTGTTTGAGTTCCTTGACCTGCGCAAGAATCATGGTAAGGAGGAGG 35539 Query 104688 CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 104747 || ||| || || ||| ||||| |||||||| || | ||||||||| | || | Sbjct 35540 TCCGCGCCCGTGACCTGTTCCTAGCTCTGTGGATTCCCGACATGTTCATGAAGCGTGTCG 35599 Query 104748 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCG 104807 || ||| | || ||| | || | ||||| || || ||||| || | || | Sbjct 35600 AGAAGAACGAGAACTGGACCCTGATGTGTCCCAACGAGTGCCCTGGCCTGGCTGACTGCT 35659 Query 104808 TGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC-G 104866 || ||||| ||||| || || ||| ||||||||| |||| ||| | | | | || | Sbjct 35660 ACGGCGAGGAATTTGAGGCTCTGTACGAAAAGTACGA-GAAGGAGGGCCGTGGTCGGCAG 35718 Query 104867 ACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 104925 |||| | || | || | ||||| | || ||| | || | || ||||||||||| | Sbjct 35719 TCGGT-CAAGGCCCAGAAGCTGTGGTATGCCATTTTGGAGGCCCAGACCGAGACTGGCAA 35777 Query 104926 ACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 104985 || | ||||| ||||| ||| ||| |||| ||||| || ||||||||| ||||| Sbjct 35778 CCCGTTTATGCTGTACAAGGACCACTGCAACCGCAAGAGCAACCAAAAGAATCTGGGTAC 35837 Query 104986 GATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 105045 || || ||||| || || || || || | || | | | |||||| || Sbjct 35838 CATTCGCAGCTCCAACCTGTGCACTGAGATTATCGAGTACTGTGCCCCTGATGAGGTTGC 35897 Query 105046 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACAT 105104 |||||| ||||| || || | || || || || ||| || | ||| || || | | Sbjct 35898 TGTGTGCAACCTGGCCTCGCTGGCGCTGCCATCGTTTGTTGACTACAGCGAGAACCGC-T 35956 Query 105105 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTA 105164 || | | || || ||||| || || || || || || ||| | | | Sbjct 35957 ACGACTTCCAGAAGCTGCACGATGTCACCAAGGTGGTGGTGCGCAATCTGAACCGCATCA 36016 Query 105165 TTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTC 105221 ||||| ||| ||||| || ||| || | || || ||| | ||||||| Sbjct 36017 TTGATGTCAATCACTACCCTGTGCCCGAG---GCACACAACAGCAACATGCGCCACCGTC 36073 Query 105222 CAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACG-----C 105276 | ||||| | ||||| |||||||| || |||| || |||| | | ||| | Sbjct 36074 CTATTGGCGTTGGTGTCCAGGGTCTGGCTGATGCCTT-----TTTGGCTCTACGTATGCC 36128 Query 105277 ATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGC 105336 ||||| || | ||| || | |||| | | || |||||||| || || ||||| Sbjct 36129 GTTTGAGTCGGCCGAGGCTCGCAAGCTCAACACTCAGATCTTTGAGACTATTTACCACGC 36188 Query 105337 CGCTCTTGAGGCGAGTTCA--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAG 105394 || | ||| | | || || ||| | || ||| || || | || |||| ||| Sbjct 36189 TGC-CCTGACG-GCGTCCATGGAGATTGCCAAGGAGGAGGGCACGTACTCGACCTACGAG 36246 Query 105395 GGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG-CT 105453 ||||| || | ||| || || | || || ||||| |||| |||| || | || || Sbjct 36247 GGTTCGCCTGTTTCGCAGGGCATCCTGCAGTTTGACATGT-GGAATGTCACTCCCAGTGA 36305 Query 105454 TCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCT 105513 | || ||||||| | |||||||| | |||||| || | ||| | || ||| || Sbjct 36306 CCTCTGGGACTGGGCTTCGCTCAAGGAGCAGATCAAGCAGCACGGTGTGCGCAACTCGCT 36365 Query 105514 CCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTT 105573 || ||||||| ||||| || ||| ||| | || || |||| || ||||| ||||| Sbjct 36366 GCTGCTGGCTCCCATGCCTACGGCCAGCACGTCGCAGATTCTGGGCAACAATGAGTGCTT 36425 Query 105574 TGAACCCTACACGACGAACATCTA 105597 ||| || ||||| | ||||| || Sbjct 36426 TGAGCCGTACACTTCCAACATTTA 36449 >seq1654 Length=5849 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 ||| |||||||| ||||| |||| |||||| || ||| | ||| || |||| || Sbjct 1858 GGCGTCAATCTCGTCAATAAAGATGATGCACGGCGCATTCTTGCGTGCCGTGGCAAACAG 1799 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAAC 9821 ||||| || ||| | ||| ||||| ||||||||||| ||||| | | | || || Sbjct 1798 GTCCCGCACCCGCGATGGGCCAACACCTACAAACATCTCGACAAACTCGGAGCCGCTGAC 1739 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | || ||| || || || || || || |||| ||| || || ||||| |||| Sbjct 1738 GCT-GAAGAACGGCACGCCCGACTCGCCTGCCGTGGCCTTGGCCAGCAGCGTCTTTCCCG 1680 Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 | || || ||||| || | |||||| ||||| ||||||||||| Sbjct 1679 TTCCGGGAGGACCCGACAGAATGGCACCGCGTGGGATCTTGGCGCC 1634 >seq1092 Length=189081 Score = 86.0 bits (94), Expect = 7e-12 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 ||||||| | || || | || ||||| || || || ||||||||||| || ||| Sbjct 137399 CCTTTGCCCAACGTCTGGTGGCCTTTGCCGCCGTCGAAGGCATCTTCTTCTCGGGCGCCT 137340 Query 94856 TCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 | ||| | || | |||||| ||||| ||||||||||| || || ||| |||||| Sbjct 137339 T-TGCTTCCATCTTTTGGCTGCGCAAGCGCGGTCTCATGCCCGGCCTGACCTTTTCCAAC 137281 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||| || || || |||||||| || ||| ||| ||||| Sbjct 137280 GAGCTGATTTCCCGCGACGAGGGCCTGCACACAGACTTTGC 137240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583243921890600