Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2283 150 5e-31 seq1628 116 1e-20 seq335 109 2e-18 seq1473 95.1 4e-14 >seq2283 Length=86879 Score = 150 bits (166), Expect = 5e-31 Identities = 167/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||| || |||||||||||||| || || || || | Sbjct 40890 TTTGCATACCACCACGAAGGCGGAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGT 40831 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||||| | || || || || || || || |||||||||||||| ||||| ||||| | Sbjct 40830 AGTCAGACAGGGTACGGCCGTCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGT 40771 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| || || |||||||| || || | || || || ||||| | ||| || | Sbjct 40770 CCGGAGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGACG 40711 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || ||||| || || | ||||| ||||| || || || || Sbjct 40710 ACTCGACTTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGAC 40668 Score = 136 bits (150), Expect = 1e-26 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||| || |||||||||||||| || || || || | Sbjct 41118 TTTGCATACCACCACGAAGGCGGAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGT 41059 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||||| | || || ||||| || || || || || || || || ||||| ||||| | Sbjct 41058 AGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTACCCGCGAAAATCAGACGCTGCTGGT 40999 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || ||||| || || | || || || ||||| | ||| || | Sbjct 40998 CCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGACG 40939 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || || | ||||| ||||| || || || || || || ||||| Sbjct 40938 ACTCGACTTCGAGAGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 40884 Score = 127 bits (140), Expect = 6e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| || || ||||| ||||| || || || ||||| || Sbjct 40602 CATACCACCACGAAGGCGGAGAACCAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTC 40543 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || |||||||||||||| ||||| ||||| || || Sbjct 40542 GGACAGGGTACGGCCGTCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCCGG 40483 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| || || | || ||||| || || | || || | ||| Sbjct 40482 GGGAATACCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTGTCGGAAGATTC 40423 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTA 140724 || ||||| || | ||||| || || | ||| |||| Sbjct 40422 CACCTCAAGGGTGATAGTCTTGCCCGTCACTGTATTTA 40385 >seq1628 Length=158365 Score = 116 bits (128), Expect = 1e-20 Identities = 189/272 (69%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || || || ||||| || || || || || || | |||||| || || || |||||| Sbjct 40078 GCCGTCATCACTGTTCCCGCTTACTTCAACGACTCTCAGCGTCAGGCCACCAAGGATGCT 40137 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || |||||| || | || || || | || || || || |||||||| || || ||| Sbjct 40138 GGTCTCATTGCTGGTCTCAACGTCCTGCGTATCATCAACGAGCCCACTGCCGCTGCCATT 40197 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || ||||| || | | ||| || || | || || |||||| | ||| Sbjct 40198 GCCTACGGTCTTGACAAGAAGGTTGAGGGCGAGCGCAACGTCCTGATCTTTGATCTGGGT 40257 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 ||||||||||| ||||| || || || || |||| || || || || || || || | Sbjct 40258 GGTGGTACTTTCGATGTGTCGCTGCTGACCATTGAGGATGGTATCTTCGAGGTCAAGTCC 40317 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGA 349881 ||||||||||| || || || ||||| || || Sbjct 40318 ACTGCTGGTGACACTCACCTGGGTGGTGAGGA 40349 >seq335 Length=221524 Score = 109 bits (120), Expect = 2e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || || ||||| | || || ||||| || || || || ||||| ||||| Sbjct 117051 TTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 117110 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 ||||| ||||| || || ||||| || || || |||||||| || | || ||||| || Sbjct 117111 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 117170 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || | || || | ||||| || || |||| ||||| || || || || || || ||| Sbjct 117171 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAAA 117230 Query 140730 ATCTGCAT 140737 |||||||| Sbjct 117231 ATCTGCAT 117238 >seq1473 Length=183801 Score = 95.1 bits (104), Expect = 4e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || ||||| || || || || | || || ||||| ||||| || || ||||||||||| Sbjct 105036 TTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 105095 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 ||||| ||||| || || ||||| || || || ||||| || || | || || || || Sbjct 105096 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 105155 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 |||| || || | || || || || |||| ||||| || || || || || || ||| Sbjct 105156 ATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 105215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515209456133945