Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1750 302 5e-77 seq1092 150 2e-31 seq2261 136 4e-27 >seq1750 Length=138661 Score = 302 bits (334), Expect = 5e-77 Identities = 523/750 (70%), Gaps = 14/750 (2%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGAC-GACTACACGCGTGTCCGTGAGACGTACGA 53253 ||||| || || | || ||| |||||| || | || || ||| |||||||||| | Sbjct 35086 ATGCGTGTGGCTGTTGGCATCTGGGGTGACAGAGTCGAC-CGCGTCATTGAGACGTACAA 35144 Query 53254 CTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTAC 53310 | | ||| ||| |||| |||||| |||||| |||| || ||||||||||||||||| Sbjct 35145 CCTCATGTCGAGC---AAGTTCTTTACTCACGCCTCGCCCACTCTGTTCAACGCTGGTAC 35201 Query 53311 GAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGG 53370 ||| | ||| |||| ||||| ||||| | |||||||| |||||||| || || Sbjct 35202 TCCTCAGGCCCAGCTGTCATCTTGCTTTCTGGTTGACATGAAGGAGGACTCGATTGAAGG 35261 Query 53371 CATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430 ||| ||||| || |||||| ||||| || |||||| | | ||||||||||| | Sbjct 35262 CATTTACGATACTCTCAAGACTTGTGCTATGATTTCCAAGATGGCTGGTGGTATCGGCCT 35321 Query 53431 CCACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCC 53488 | | || || | ||| ||| || | ||| | || || || ||||| | || Sbjct 35322 CAA-TGTTC-ACCGTATCCGCGCCACTGGCTCGTACATTGCTGGTACCAACGGTACCTCC 35379 Query 53489 GATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGT 53548 | || || | || ||||| ||||| ||||||||||| ||||| || ||| ||||||| Sbjct 35380 AACGGCATTATCCCCATGCTGCGCGTGTTCAACAACACTGCCCGCTATGTCGACCAGGGC 35439 Query 53549 GGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATG 53608 || |||||| || | || ||||| ||||| ||||||||||||||||| | | Sbjct 35440 GGCAACAAGCGCCCTGGTGCTTTTGCCATTTACCTGGAGCCGTGGCACGCCGATGTGTTT 35499 Query 53609 GAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTT 53668 ||||| || || ||||| |||||| ||| | || ||| | ||| |||||||||||| Sbjct 35500 GAGTTCCTTGACCTGCGCAAGAATCATGGTAAGGAGGAGGTCCGCGCCCGTGACCTGTTC 35559 Query 53669 ACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTAC 53728 ||||||||||||||| ||| | |||||| | || |||||| ||||| | ||| | Sbjct 35560 CTAGCTCTGTGGATTCCCGACATGTTCATGAAGCGTGTCGAGAAGAACGAGAACTGGACC 35619 Query 53729 CTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAACGA 53787 |||||||| || ||||||||||| ||||| | | || |||||| ||||| ||| | | Sbjct 35620 CTGATGTGTCCCAACGAGTGCCCTGGCCTGGCTGACTG-CTACGGCGAGGAATTTGAGGC 35678 Query 53788 GATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGT 53847 |||| | ||||| ||||||| | || ||||||||| | || | Sbjct 35679 TCTGTACGAAAAGTACGAGAAGGAGGGCCGTGGTCGGCAGTCGGTCAAGGCCCAGAAGCT 35738 Query 53848 ATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGA 53907 ||| |||| || | || |||| ||||| || | |||| ||| |||||||| Sbjct 35739 GTGGTATGCCATTTTGGAGGCCCAGACCGAGACTGGCAACCCGTTTATGCTGTACAAGGA 35798 Query 53908 TTCGGTCAACGAGAAGAGCAACCAGAAGAA 53937 |||| ||||||||||| ||||| Sbjct 35799 CCACTGCAACCGCAAGAGCAACCAAAAGAA 35828 Score = 111 bits (122), Expect = 2e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 |||||| | ||| ||| |||||||||||| | ||| | || | | ||| || Sbjct 36602 TCAAGGCTCTGTACAAGACAGTGTGGGAGATTTCGCAGCGCACGGTGGTGCAGATGGCTG 36661 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 | || |||||||| | ||||||||||| ||||| || ||||| |||| || | ||| Sbjct 36662 CCGACCGTGGTGCCTTTATCGACCAGTCGCAGTCGCTCAACATTCACATGAAGGACCCTA 36721 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 | ||| |||| | | | ||||||||| ||| |||||| ||| ||||||||||| | Sbjct 36722 CCATGGGCAAGATTACCAGCATGCACTTTGCCGGCTGGAAGCTGGGTCTCAAGACGGGCA 36781 Query 55908 TGTACTATCTGCGGAC 55923 ||||||| ||||| || Sbjct 36782 TGTACTACCTGCGTAC 36797 >seq1092 Length=189081 Score = 150 bits (166), Expect = 2e-31 Identities = 552/845 (65%), Gaps = 32/845 (4%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||| ||||| || || ||||||||||| || | | ||||||||||||||| Sbjct 136952 TAGTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTCTCCATG 137011 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCC--CAAACTGTG-CCATGAGG 74579 |||| || ||||| | | | ||| | ||| || | | | | ||| || Sbjct 137012 AAGTCAAAGGGGTTGGTGGAGCGGTAGAC---CTTTTCGTTGCCGAGGGCGACCAGCAGA 137068 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 || || || ||||| | |||||||||| |||| | || | |||||||| || | Sbjct 137069 CGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGTCGGCGTTCATGCCGAGCAGAGCG 137128 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTTG 74699 || ||||| || ||||| | ||||| | || | || ||| || || | Sbjct 137129 CAGGGCAGGGCGTCGGTCAAGAACTCCTTTTCAATGGCGACAGCGTCGGTGATGATTTCC 137188 Query 74700 TGAATGT-CTT--TGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAA 74755 | ||| ||| || |||| || | | ||||| ||| | ||| | || |||||| Sbjct 137189 TCAATCAGCTTCTTGCTGGGGCGGTTGT---TGAGGTGCGAGAAGAGCAGGCA-GGCAAA 137244 Query 74756 CTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCAT 74815 || ||| ||| || || | | |||| || || ||||| | ||||| ||||| Sbjct 137245 GTCTGTGTGCAGGCCCTCGTCGCGGGAAATCAGCTCGTTGGAAAAGGTCAGGCCGGGCAT 137304 Query 74816 AAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTC 74875 || || ||||| || ||||||||||| | |||| || ||||||||||||||| Sbjct 137305 GAGACCGCGCTTGCGCAGCCAAAAGATGGAAGCAAAGGCGCCCGAGAAGAAGATGCCTTC 137364 Query 74876 GACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATC--GGAAGTC-ATCCAAGT 74932 ||| |||||||| || || ||||| || || | | || || | | ||||| | Sbjct 137365 GACGGCGGCAAAGGCCACCAGACGTTGGGCAAAGGTCGACTCGTGGTCGGCAATCCACTT 137424 Query 74933 CTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGG-ACAGTATCGATCGCTTGGAAGAGGC 74991 | ||||| || || || || || |||||| | |||||| || || | || ||| Sbjct 137425 GAGGGCCCAGTCGGCCTTGCGGCGGA-TGCAGGGAATAGTATCAATGGCGTTAAACAGG- 137482 Query 74992 TTGCCTTCTCT--TCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGA 75049 | || | || |||| ||||||| | | ||||||||| || ||||| ||||| || Sbjct 137483 -TAGCTGCGCTGGGCGGGCTCCTTGATGTACGTGTCAATCAGCAGCGAGTATGTCTCGGA 137541 Query 75050 ATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTAC 75109 || || ||| | | ||| | ||||||| | || ||||| | ||||| || Sbjct 137542 GTGGATGTTCTCCATCATGATCTGAAAGCCGTAGAAGCAGCGGGCCTCGGGGATCTGGAC 137601 Query 75110 ATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAA 75169 || || || | | | | ||||| |||| ||||||||||| ||||| || || Sbjct 137602 CTCGCCCGAGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGACGCGGCAAAGAA 137661 Query 75170 AGCCAGTACCATTTTGATAAAGTGGCGCTCATC---GTCAGTGAGTTTGTCCCAATCCTT 75226 ||||| || ||| |||| || || || || | |||| ||| || | Sbjct 137662 GGCCAGCACGTGCGAGATGAAGTACTTTTCGTCCTTGTTCATGCGGTTGTTCCAGTCGTG 137721 Query 75227 CAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA--ACTCCCAATC-GCCTTTTT 75283 ||||||| | || |||||||||||| | |||||||| || || || |||||||| Sbjct 137722 CAGGTCCTTGGACAGGTCAATCTCCTCGGCAGTCCAGAAGGACGCC---TCGGCCTTTTT 137778 Query 75284 GTACA 75288 ||||| Sbjct 137779 GTACA 137783 >seq2261 Length=86933 Score = 136 bits (150), Expect = 4e-27 Identities = 195/275 (71%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 152022 CAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCC 152081 || ||||||| ||| || || | ||| |||||| |||||| ||||| || | ||| Sbjct 67885 CAGACGCGTGTGGATATAACGAGCCGAGGCAGCATCCGAGCCACCGGCCAGACGAGATCC 67944 Query 152082 AAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141 ||| | || |||||| ||| ||||| ||||||| ||||| || ||||| |||| Sbjct 67945 AAAGTTACCGCTGGGCTCCAGGCAGTTGACATTGTTGGAACCCACAAAGTTCTGCGCCAG 68004 Query 152142 ATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGAT 152201 | | ||| || |||||| ||| |||||||| || || ||||| | | | | Sbjct 68005 ACCAATAATAGTCTGCTGCAGCGACGCCTCACCGTGCTGGTAGGCCGTACGGCCAGATAC 68064 Query 152202 GTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTA 152261 ||| || ||||||| |||||||||||||| | | ||| || ||| ||| ||||| Sbjct 68065 GTAACCAGCCAACTCAACCACCTTCATGTCCTTGACAATGTTACTCATGAAACACGCGTA 68124 Query 152262 AATCACCTTGCGCTGGGATGGTTTCAAACCGTCCA 152296 ||||||||||||||| || || || ||||||| Sbjct 68125 AATCACCTTGCGCTGACCGGGCTTAAAGCCGTCCA 68159 Score = 113 bits (124), Expect = 5e-20 Identities = 169/238 (71%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 117326 GCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTC 117385 ||||||||| |||||| || ||||| | || || | || || ||||||| | ||| Sbjct 67913 GCAGCATCCGAGCCACCGGCCAGACGAGATCCAAAGTTACCGCTGGGCTCCAGGCAGTTG 67972 Query 117386 AGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCC 117445 | ||||||| ||||||||||| || |||| | ||| || || || |||| Sbjct 67973 ACATTGTTGGAACCCACAAAGTTCTGCGCCAGACCAATAATAGTCTGCTGCAGCGACGCC 68032 Query 117446 TCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATG 117505 ||||| || || || ||||| | | | ||||| || |||| || | ||||||||||| Sbjct 68033 TCACCGTGCTGGTAGGCCGTACGGCCAGATACGTAACCAGCCAACTCAACCACCTTCATG 68092 Query 117506 TC--TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTT 117561 || |||| | ||| || ||| || || ||||||||||||||||||| ||||| Sbjct 68093 TCCTTGAC--AATGTTACTCATGAAACACGCGTAAATCACCTTGCGCTGACCGGGCTT 68148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547200164937000