Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04-
03] 2,315 sequences; 28,117,660 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq2283 170 4e-37
seq335 150 4e-31
seq1473 125 2e-23
>seq2283
Length=86879
Score = 170 bits (188), Expect = 4e-37
Identities = 165/212 (78%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || |||||||| || |||||||| || || | ||||| | |||||
Sbjct 41323 AGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCC 41264
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||| || ||||| || ||||| || ||||| ||||||| || ||||| |||
Sbjct 41263 TCCAGCTGCTTACCCGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTATCC 41204
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||||| || |||||||| || ||| ||| ||||| |||||||| |||
Sbjct 41203 TGGATCTTCGACTTCACATTGTCGATGGTATCGGAGGATTCCACCTCAAGAGTGATTGTC 41144
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || |||||||| || || | |||||
Sbjct 41143 TTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 41112
Score = 161 bits (178), Expect = 2e-34
Identities = 161/209 (77%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || ||||| ||||||||||| || ||||||||||| || | |||||
Sbjct 40593 ACGAAGGCGGAGAACCAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCGGACAGGGT 40534
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || ||||||||||| || || ||||| || || || ||||| || |||| ||
Sbjct 40533 ACGGCCGTCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATACC 40474
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||||||||||||||| || || || ||||||||||| || ||| ||||| ||
Sbjct 40473 CTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTGTCGGAAGATTCCACCTCAAG 40414
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTA 211101
||||| ||||| ||||| | || ||||
Sbjct 40413 GGTGATAGTCTTGCCCGTCACTGTATTTA 40385
Score = 161 bits (178), Expect = 2e-34
Identities = 169/222 (76%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || ||||||||||| ||||| || |||||||| || || | |||||
Sbjct 41105 ACGAAGGCGGAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 41046
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| ||||||||||| || ||||| || || || || ||||| || |||| ||
Sbjct 41045 ACGGCCATCCTCCAGCTGCTTACCCGCGAAAATCAGACGCTGCTGGTCCGGGGGAATACC 40986
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||| || ||||| || ||||| || || || || |||||
Sbjct 40985 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCGACTTCGAG 40926
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|||||| ||||| || || |||||||| || || | |||||
Sbjct 40925 AGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 40884
Score = 154 bits (170), Expect = 3e-32
Identities = 160/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || ||||||||||| ||||| || |||||||| || || | |||||
Sbjct 40877 ACGAAGGCGGAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 40818
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || ||||||||||| || || ||||| || || || ||||| ||||||| ||
Sbjct 40817 ACGGCCGTCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCCGGAGGAATGCC 40758
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||| ||||||||||| || ||||| || ||||| || || || || |||||
Sbjct 40757 CTCCTTATCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCGACTTCGAG 40698
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102
|||||| ||||| || ||||| ||||| ||
Sbjct 40697 AGTGATGGTCTTGCCGGTGAGGGTCTTGAC 40668
>seq335
Length=221524
Score = 150 bits (166), Expect = 4e-31
Identities = 157/205 (77%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 210915 AGAGTGGACT--CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCT 210972
|| ||||||| | || |||||||| || || | || || | ||||| ||||||||||
Sbjct 117037 AGCGTGGACTGACCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCCTCCAGCTGCT 117096
Query 210973 TGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTT 211032
|||| |||||||| || || || ||||| || |||| || ||||||||||| |||||
Sbjct 117097 TGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGG 117156
Query 211033 GTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGA 211092
|| || || ||||| ||||| ||| ||||||||||| || |||||||| ||||| |
Sbjct 117157 ACTTGACATTGTCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCA 117216
Query 211093 GAGTCTTTACAAACACCTGCATTTT 211117
| ||||| || || | |||||| ||
Sbjct 117217 GGGTCTTGACGAAAATCTGCATCTT 117241
>seq1473
Length=183801
Score = 125 bits (138), Expect = 2e-23
Identities = 135/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| || ||||| || || | ||||| | ||||| || ||||||||||| || |||||
Sbjct 105036 TTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 105095
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
|| || || ||||| || |||| || ||||||||||||||||| || ||||| |||
Sbjct 105096 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 105155
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||| ||| || ||||| || || || ||||| ||||| || ||||| || ||
Sbjct 105156 ATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 105214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159117618464975
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |