Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1092 149 5e-31 >seq1092 Length=189081 Score = 149 bits (164), Expect = 5e-31 Identities = 546/845 (65%), Gaps = 15/845 (2%) Strand=Plus/Plus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 |||||||| ||| || ||||| |||||||| || || ||||| | | ||| || || Sbjct 136946 TTTTGGTAGTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTC 137005 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 ||||| || ||||| || || || | | ||| ||||| || || || ||| Sbjct 137006 TCCATGAAGTCAAAGGGGTTGGTGGAGCGGTAGACCTTTTCGTTGCCGAGGGCGACCAGC 137065 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA-A 4435 | ||||| || ||||| || || ||||| |||| || ||| ||| || || | | | Sbjct 137066 AGACGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGTCGGCGTTCATGCCGAGCAGA 137125 Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | || || || |||| ||||| ||||| | ||| || | || || || ||||| || Sbjct 137126 GCGCAG-GGCAGGGCGTCGGTCAAGAACTCCTTTTCAATGGCGACAGCGTCGGTGATGAT 137184 Query 4496 ATCTTTTATTTTATCTT-TAGATGGTTTATTTACTAAGTATCCA-AACAATAAACACGCA 4553 || | || | ||| | | ||| || | || | | || | | || ||| Sbjct 137185 TTCCTCAATC--AGCTTCTTGCTGGGGCGGTTGTTGAGGTGCGAGAAGAGCAGGCAGGCA 137242 Query 4554 AAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGC 4613 || || |||| || ||||| | | |||||| ||||| ||||| || | |||||| Sbjct 137243 AAGTCTGTGTGCAGGCCCTCGTCGCGGGAAATCAGCTCGTTGGAAAAGGTCAGGCCGGGC 137302 Query 4614 ATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCT 4673 || | ||| | ||| |||||||| || | ||||| | || || ||||| |||||| Sbjct 137303 ATGAGACCGCGCTTGCGCAGCCAAAAGATGGAAGCAAAGGCGCCCGAGAAGAAGATGCCT 137362 Query 4674 TCTACGGCGGCAAACGCTACTA---ATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATC 4730 || ||||||||||| || || | | ||| | ||| || | | ||| |||| Sbjct 137363 TCGACGGCGGCAAAGGCCACCAGACGTTGGGCAAAGGTCGA-CT--CGTGGTCGGCAATC 137419 Query 4731 CATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAAT 4790 || || | ||||||| || || | ||| ||||| || | || |||||||| Sbjct 137420 CACTTGAGGGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTATCAATGGCGTTAAAC 137479 Query 4791 AATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCA 4850 | | || | || || | || || ||||| || || || || | || Sbjct 137480 AGGTAGCTGCGCTGGGCGGGCTCCTTGATGTACGTGTCAATCAGCAGCGAGTATGTCTCG 137539 Query 4851 GAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGA 4910 || || || || || || |||||||| ||||| ||||| | || || | | || Sbjct 137540 GAGTGGATGTTCTCCATCATGATCTGAAAGCCGTAGAAGCAGCGGGCCTCGGGGATCTGG 137599 Query 4911 ACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAA 4970 || ||| | || | || || | ||| ||||| || || ||||| || ||||| Sbjct 137600 ACCTCGCCCGAGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGACGCGGCAAAG 137659 Query 4971 AACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAA---GTTTTTTCCAGTGG 5027 || |||| || || || || ||||||| |||||| || | | || ||||||| | Sbjct 137660 AAGGCCAGCACGTGCGAGATGAAGTACTTTTCGTCCTTGTTCATGCGGTTGTTCCAGTCG 137719 Query 5028 GGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTG 5087 ||| || || | | |||| || || ||||||| || ||||| || || |||||| Sbjct 137720 TGCAGGTCCTTGGACAGGTCAATCTCCTCGGCAGTCCAGAAGGACGCCTCGGCCTTTTTG 137779 Query 5088 TACAT 5092 ||||| Sbjct 137780 TACAT 137784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427037551195895