Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2283 109 1e-18 seq335 93.3 1e-13 >seq2283 Length=86879 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || |||||||||||||| || ||||||||||| || | | || | ||||| Sbjct 41096 GAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATC 41037 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || ||||| || || | ||||||||||| | || || ||||| || Sbjct 41036 CTCCAGCTGCTTACCCGCGAAAATCAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTC 40977 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| | || | | | || || ||| ||||| ||||| || || Sbjct 40976 CTGGATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCGACTTCGAGAGTGATGGT 40917 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || |||||||| ||||||| ||||| Sbjct 40916 CTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 40884 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || |||||||||||||| || ||||||||||| || | | || | || || Sbjct 40868 GAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTC 40809 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| || || ||||| || | ||||||||||| | || || ||||| Sbjct 40808 CTCCAGCTGCTTT--CCAGCAAAGATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTA 40751 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || || || || ||||| | || | | | || || ||| ||||| ||||| || Sbjct 40750 TCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCGACTTCGAGAGTGATG 40691 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGA 152094 || ||||| ||||| ||||| |||| Sbjct 40690 GTCTTGCCGGTGAGGGTCTTGACGA 40666 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| |||| | || | ||||| Sbjct 41323 AGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCC 41264 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||| || || | ||||||||||| | || || ||||| || Sbjct 41263 TCCAGCTGCTTACCCGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTATCC 41204 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| | || | | | || || || || |||||||| || || Sbjct 41203 TGGATCTTCGACTTCACATTGTCGATGGTATCGGAGGATTCCACCTCAAGAGTGATTGTC 41144 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || |||||||| ||||||| ||||| Sbjct 41143 TTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 41112 Score = 91.5 bits (100), Expect = 3e-13 Identities = 136/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || || ||||| ||||| || |||||||| || |||| | || | || || Sbjct 40584 GAGAACCAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCGGACAGGGTACGGCCGTC 40525 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| || || ||||| || | ||||||||||| | || || ||||| Sbjct 40524 CTCCAGCTGCTTT--CCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCCTTG 40467 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || || || ||| |||||| | || | | |||| ||| || || ||||| || ||| Sbjct 40466 TCCTGGATCTTTGACTTGACATTGTCGATGGTGTCGGAAGATTCCACCTCAAGGGTGATA 40407 Query 152070 GTTTTGCCCGT 152080 || |||||||| Sbjct 40406 GTCTTGCCCGT 40396 >seq335 Length=221524 Score = 93.3 bits (102), Expect = 1e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| || | | ||| | ||||| || || || || |||||||| Sbjct 117051 TTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 117110 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||||||||||| | || || ||||| || ||||| || |||||| | || Sbjct 117111 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 117170 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | |||| || ||| || || || ||||| || || ||||| || ||||| ||||| Sbjct 117171 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAAA 117230 Query 152097 ACCTGCATTTT 152107 | |||||| || Sbjct 117231 ATCTGCATCTT 117241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153786576593365