Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2283 140 2e-28 seq335 116 3e-21 >seq2283 Length=86879 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || |||||||| || ||| |||||| ||||||||||| |||| Sbjct 41338 CCGCCACGCAGACGCAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 41279 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || | || ||||||||||| || || || |||| |||||||| || | ||| Sbjct 41278 AGGGTACGGCCATCCTCCAGCTGCTTACCCGCGAAAATCAGGCGCTGCTGGTCCGGAGGA 41219 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || ||||| ||| |||||| ||||| | | ||||| |||| |||||||||| Sbjct 41218 ATGCCCTCCTTATCCTGGATCTTCGACTTCACATTGTCGATGGTATCGGAGGATTCCACC 41159 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | || || ||||| || || || ||||| |||||||||||||| Sbjct 41158 TCAAGAGTGATTGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 41112 Score = 120 bits (132), Expect = 2e-22 Identities = 140/187 (75%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| |||||| |||||||| || |||| || || |||| ||| Sbjct 40580 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCGGACAGGGTACGGCCGTCCTCC 40521 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||||| ||||||||| || | || | ||| ||||| ||| Sbjct 40520 AGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGG 40461 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | |||||||||| ||||||||||| | || || |||| Sbjct 40460 ATCTTTGACTTGACATTGT--CGATGGTGTCGGAAGATTCCACCTCAAGGGTGATAGTCT 40403 Query 44307 TTCCCGT 44313 | ||||| Sbjct 40402 TGCCCGT 40396 Score = 111 bits (122), Expect = 1e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||||||||| || |||||| ||||||||||| || | || || |||| ||| Sbjct 40864 ACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTCCTCC 40805 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||||| ||||||||| || | ||| | || ||||| ||| Sbjct 40804 AGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTATCCTGG 40745 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||| || | || || || || | || || ||||| Sbjct 40744 ATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCGACTTCGAGAGTGATGGTCTTG 40685 Query 44309 CCCGTGAGGGTCTTCACGA 44327 || ||||||||||| |||| Sbjct 40684 CCGGTGAGGGTCTTGACGA 40666 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||||||||| || |||||| ||||||||||| || | || || | || ||| Sbjct 41092 ACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCCTCC 41033 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || || |||| ||||||||| || | || | ||| ||||| ||| Sbjct 41032 AGCTGCTTACCCGCGAAAATCAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGG 40973 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||| || | || || || || | || || ||||| Sbjct 40972 ATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCGACTTCGAGAGTGATGGTCTTG 40913 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| |||||||||||||| Sbjct 40912 CCGGTAAGAGTCTTGACGAAGATTTGCAT 40884 >seq335 Length=221524 Score = 116 bits (128), Expect = 3e-21 Identities = 150/204 (74%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 44138 AGCGTGCTCT--CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCT 44195 |||||| || |||| ||||||||||| || | || ||| | || |||||||||| Sbjct 117037 AGCGTGGACTGACCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCCTCCAGCTGCT 117096 Query 44196 TCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCT 44255 | || || ||||||| ||||||||| || | || | || ||||| ||| ||||| Sbjct 117097 TGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGG 117156 Query 44256 GCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 ||| || ||| | || ||||| | ||| || ||||| | ||||||||||| ||||| Sbjct 117157 ACTTGACATTGT--CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGT 117214 Query 44314 GAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| ||||| || ||||| Sbjct 117215 CAGGGTCTTGACGAAAATCTGCAT 117238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359980243208355