Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2283 136 1e-26 seq335 136 1e-26 seq1473 114 3e-20 >seq2283 Length=86879 Score = 136 bits (150), Expect = 1e-26 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || || || || ||||| || ||||||||| ||| || Sbjct 41115 CAAATCTTCGTCAAGACTCTTACCGGCAAGACAATCACTCTTGAGGTGGAATCCTCCGAT 41174 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| ||||| || || || || |||||||||||||| Sbjct 41175 ACCATCGACAATGTGAAGTCGAAGATCCAGGATAAGGAGGGCATTCCTCCGGACCAGCAG 41234 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || ||||| || ||||| | || || |||| || ||| || Sbjct 41235 CGCCTGATTTTCGCGGGTAAGCAGCTGGAGGATGGCCGTACCCTGTCCGACTACAACATC 41294 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || || || || || || || ||| || Sbjct 41295 CAGAAGGAGTCCACCCTCCACCTGGTTCTG 41324 Score = 132 bits (146), Expect = 1e-25 Identities = 141/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || |||||||| ||||||||| || ||||||||||| || ||||| | Sbjct 40396 ACGGGCAAGACTATCACCCTTGAGGTGGAATCTTCCGACACCATCGACAATGTCAAGTCA 40455 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || || || ||||||||||| || || ||||| || ||||| Sbjct 40456 AAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGTCTGATCTTTGCTGGAAAG 40515 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || || || | || || |||| |||||| |||| || || || || || || Sbjct 40516 CAGCTGGAGGACGGCCGTACCCTGTCCGACTATAACATCCAGAAGGAGTCCACTCTCCAC 40575 Query 178125 CTTGTT 178130 || ||| Sbjct 40576 CTGGTT 40581 Score = 122 bits (134), Expect = 2e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || || || || ||||| ||||| || || || || Sbjct 40887 CAAATCTTCGTCAAGACTCTTACCGGCAAGACCATCACTCTCGAAGTCGAGTCGTCGGAT 40946 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| |||||||| || || || || ||||||||||| Sbjct 40947 ACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAGCAG 41006 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || ||||| || ||||| | || || | || || ||| || Sbjct 41007 CGTCTGATTTTCGCGGGTAAGCAGCTGGAGGATGGCCGTACCCTGTCTGACTACAACATC 41066 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || || || ||| Sbjct 41067 CAGAAGGAGTCTACTCTTCACCTGGTT 41093 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || ||||| || || || ||||| ||||| || || || || ||||| | Sbjct 40666 TCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAAGTCGAGTCGTCGGATACCATTG 40725 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | |||||||| ||||| ||||| || || || || |||||||||||||| || || | Sbjct 40726 ACAACGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCTCCGGACCAGCAGCGTCTGA 40785 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||| || ||||| ||||| || || || | || || | || || ||| |||| || | Sbjct 40786 TCTTTGCTGGAAAGCAGCTGGAGGACGGCCGTACCCTGTCTGACTACAACATCCAGAAGG 40845 Query 178111 AATCAACACTGCATCTTGTT 178130 | || || || || || ||| Sbjct 40846 AGTCTACTCTTCACCTGGTT 40865 >seq335 Length=221524 Score = 136 bits (150), Expect = 1e-26 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || || || ||||| ||||||||||| || ||| ||| Sbjct 117235 CAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGGTTGAGTCCTCGGAC 117176 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||||||||| || || || || ||||||||||| Sbjct 117175 ACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 117116 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || ||||| | ||||| | || || ||| || Sbjct 117115 CGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCTGACTACAACATC 117056 Query 178104 CAAAA 178108 || || Sbjct 117055 CAGAA 117051 >seq1473 Length=183801 Score = 114 bits (126), Expect = 3e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 177916 AAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAA 177975 || ||| || | |||||| || || || || || || || || ||||| ||||| || Sbjct 105228 AACTGCCACACAGTTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGT 105169 Query 177976 GCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGG 178035 ||| ||||| ||||| |||||||| ||||| |||||||| || || || || |||| Sbjct 105168 CCTCGGACACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGG 105109 Query 178036 ACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATT 178095 ||||||| || || ||||| || || || ||||| || ||||| | || || |||| | Sbjct 105108 ACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCCGACT 105049 Query 178096 ATAACGTCCAAAA 178108 | ||| | || || Sbjct 105048 ACAACATTCAGAA 105036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203695496204110