Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04-
03] 2,315 sequences; 28,117,660 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq335 149 6e-31
seq1473 138 1e-27
seq2283 136 4e-27
>seq335
Length=221524
Score = 149 bits (164), Expect = 6e-31
Identities = 161/208 (77%), Gaps = 8/208 (4%)
Strand=Plus/Plus
Query 41663 AGCGTGCTCT--CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCT 41720
|||||| || ||||||| ||||| ||||| || || ||||| | || || |||||||
Sbjct 117037 AGCGTGGACTGACCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCCTCCAGCTGCT 117096
Query 41721 TGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTT 41780
|||| ||||| ||||| ||||| ||||||| ||||| || |||||||||| ||| | ||
Sbjct 117097 TGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTG 117155
Query 41781 G-CTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCG 41837
| ||| || | || | |||||| ||||| ||||| | || ||||| |||||||
Sbjct 117156 GACTTGACATTGTCG--ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCG 117213
Query 41838 TCAGCGTCTTTACGAAAATCTGCATGTT 41865
|||| ||||| |||||||||||||| ||
Sbjct 117214 TCAGGGTCTTGACGAAAATCTGCATCTT 117241
>seq1473
Length=183801
Score = 138 bits (152), Expect = 1e-27
Identities = 142/183 (78%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||||||||| |||||||| |||||||| | || || ||||||||||| || || |
Sbjct 105034 CCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 105093
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792
|||| ||||| ||||||| ||||| || |||||||||| ||| || ||| ||| |
Sbjct 105094 TCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTG 105152
Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851
| | ||||| ||||| ||||||| || || || ||||||||||| ||||| |||
Sbjct 105153 TCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACG 105212
Query 41852 AAA 41854
|||
Sbjct 105213 AAA 105215
>seq2283
Length=86879
Score = 136 bits (150), Expect = 4e-27
Identities = 169/229 (74%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
|||||| || ||||| | ||||| || || ||| ||||||||| ||||| ||||||||
Sbjct 41339 GCCGCCACGCAGACGCAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 41280
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||||| || | || || |||||||| || ||||| ||||||||||| ||||||| ||
Sbjct 41279 CAGGGTACGGCCATCCTCCAGCTGCTTACCCGCGAAAATCAGGCGCTGCTGGTCCGGAGG 41220
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
|| || |||||| ||| ||| || |||| || | | | || ||| || ||||
Sbjct 41219 AATGCCCTCCTTATCCTGGATCTTCGACTTC-ACATTGTCGATGGTATCGGAGGATTCCA 41161
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| | || || || || || || || ||||| ||||| || |||||
Sbjct 41160 CCTCAAGAGTGATTGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 41112
Score = 127 bits (140), Expect = 2e-24
Identities = 159/216 (74%), Gaps = 4/216 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||||| || || ||| ||||||||| ||||||||||||||
Sbjct 40598 CCACCACGAAGGCGGAGAACCAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCGGAC 40539
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || |||| || |||||||| || || || ||||| ||||| ||||||| ||||
Sbjct 40538 AGGGTACGGCCGTCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGA 40479
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| | |||||||||| ||| ||| ||| || | || | |||||| || ||||
Sbjct 40478 ATACCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCG--ATGGTGTCGGAAGATTCCA 40421
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849
|||| | || || || || ||||||| || ||||
Sbjct 40420 CCTCAAGGGTGATAGTCTTGCCCGTCACTGTATTTA 40385
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462290622078000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |