Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq335 149 6e-31 seq1473 138 1e-27 seq2283 136 4e-27 >seq335 Length=221524 Score = 149 bits (164), Expect = 6e-31 Identities = 161/208 (77%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 41663 AGCGTGCTCT--CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCT 41720 |||||| || ||||||| ||||| ||||| || || ||||| | || || ||||||| Sbjct 117037 AGCGTGGACTGACCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCCTCCAGCTGCT 117096 Query 41721 TGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTT 41780 |||| ||||| ||||| ||||| ||||||| ||||| || |||||||||| ||| | || Sbjct 117097 TGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTG 117155 Query 41781 G-CTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCG 41837 | ||| || | || | |||||| ||||| ||||| | || ||||| ||||||| Sbjct 117156 GACTTGACATTGTCG--ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCG 117213 Query 41838 TCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| ||||| |||||||||||||| || Sbjct 117214 TCAGGGTCTTGACGAAAATCTGCATCTT 117241 >seq1473 Length=183801 Score = 138 bits (152), Expect = 1e-27 Identities = 142/183 (78%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||||||||| |||||||| |||||||| | || || ||||||||||| || || | Sbjct 105034 CCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 105093 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||| ||||| ||||||| ||||| || |||||||||| ||| || ||| ||| | Sbjct 105094 TCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTG 105152 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | ||||| ||||| ||||||| || || || ||||||||||| ||||| ||| Sbjct 105153 TCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACG 105212 Query 41852 AAA 41854 ||| Sbjct 105213 AAA 105215 >seq2283 Length=86879 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | ||||| || || ||| ||||||||| ||||| |||||||| Sbjct 41339 GCCGCCACGCAGACGCAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 41280 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || | || || |||||||| || ||||| ||||||||||| ||||||| || Sbjct 41279 CAGGGTACGGCCATCCTCCAGCTGCTTACCCGCGAAAATCAGGCGCTGCTGGTCCGGAGG 41220 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||| ||| ||| || |||| || | | | || ||| || |||| Sbjct 41219 AATGCCCTCCTTATCCTGGATCTTCGACTTC-ACATTGTCGATGGTATCGGAGGATTCCA 41161 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || || || ||||| ||||| || ||||| Sbjct 41160 CCTCAAGAGTGATTGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 41112 Score = 127 bits (140), Expect = 2e-24 Identities = 159/216 (74%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || ||| ||||||||| |||||||||||||| Sbjct 40598 CCACCACGAAGGCGGAGAACCAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCGGAC 40539 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || |||||||| || || || ||||| ||||| ||||||| |||| Sbjct 40538 AGGGTACGGCCGTCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGA 40479 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | | |||||||||| ||| ||| ||| || | || | |||||| || |||| Sbjct 40478 ATACCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCG--ATGGTGTCGGAAGATTCCA 40421 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 |||| | || || || || ||||||| || |||| Sbjct 40420 CCTCAAGGGTGATAGTCTTGCCCGTCACTGTATTTA 40385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462290622078000