Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tolypocladium_20sp._20Salcha_20MEA- 2_20[genbank_20GCA_5F000750145.2_202015-03-02] 44 sequences; 30,832,988 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq11 109 4e-19 seq5 96.9 3e-15 >seq11 Length=970842 Score = 109 bits (120), Expect = 4e-19 Identities = 272/405 (67%), Gaps = 20/405 (5%) Strand=Plus/Plus Query 30062 ACGTAAAACTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 30118 ||||||||||| | ||||| ||||| || || || |||||| || ||| || Sbjct 259193 ACGTAAAACTGGGCAAACATG---TGGCAAGGCGGCAGGGCCATGCTCGTCAGGTCCTTC 259249 Query 30119 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTCC 30175 |||||||| || ||| ||| || || | ||| | || || ||| | || | | Sbjct 259250 GGGTTCCACGCAGACATGATTATACGGCGGTCGTAGGGCTTCGTCCGCAGCTTGTGTATC 259309 Query 30176 ACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTA 30234 ||| || || ||||| || || ||| |||| |||||||| | || ||| ||| Sbjct 259310 ACGTCG----GCGAGCTGGTCGACGCCCTGGCCCGTGTAGTCTGTCTTCGCATCCACGTA 259365 Query 30235 CTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT 30294 | | || || || |||| ||||||||||||||| || || |||| || || |||| | Sbjct 259366 CGCGGCGCCAAAGTGCCGCCACTGGAACCCGTAGACGGGCCCCAAATCGCCAACTTCTCG 259425 Query 30295 GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTAC 30354 |||| | ||| ||| | || || | || |||||| ||||||| ||||| || Sbjct 259426 GTGCGACAGGCCGACGCCGTCGAGGAACTCGCGCGACCCGTTGCCGTCCCAAATCTTGAC 259485 Query 30355 CCC--CTTCTCAGAGAGC-TCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 30411 || | || | || || | ||| | ||| |||| || ||||||||||||||| Sbjct 259486 GCCGGCCTCGCTCAGCGCGAGTGAGGACGTGTTGG--CCTC-GATGAACCACAGCAGCTC 259542 Query 30412 CTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 | |||||||| ||| ||||| | ||| || || ||||| || Sbjct 259543 GGCGACGACGGCTTTCAGGAAGACGCGCTTCGTGGTCAGGAGTGG 259587 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29828 ATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACG 29887 |||| ||| ||||||| | ||||| | ||| || || ||| |||| || ||| Sbjct 258878 ATCCCCAGCTCGGGAAAGTCCCGTGGCTCGCGCTCCAGTTGCTCCTTGAGCGCATCAACG 258937 Query 29888 TTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTG-GACAAACTCTCCCGGTTCTAGCCC 29946 | || || |||||||| |||||||||| | ||| | || || || || | ||| | Sbjct 258938 TGGTCGAGATAGACGTGGGCGTCTCCCATGACGTGCGTCAGGCTG-CCGGGCACCAGCTC 258996 Query 29947 GGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCC 30006 | || || || | ||||| ||| || | | ||||||||| ||||| || || || || Sbjct 258997 GCACACATGGGCAAGCATGTGCGTCAGCAACGCGTAGCTGGCAATGTTGAACGGGACGCC 259056 Query 30007 GAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 30042 ||| |||||||| | ||||||||||| |||||||| Sbjct 259057 GAGGCCCATGTCGCAGGACCTCTGGTATAGCTGACA 259092 >seq5 Length=1590114 Score = 96.9 bits (106), Expect = 3e-15 Identities = 132/180 (73%), Gaps = 6/180 (3%) Strand=Plus/Minus Query 52730 CGTCAAGGTGAGGCTGAGGGCCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT- 52788 |||||||||| || || | || ||| | ||| |||| || |||||||||||||| Sbjct 14019 CGTCAAGGTGCGGGTGCGAACCACCAAGATCCCCCAGATCGGAGACAAGTTTGCGTCTCG 13960 Query 52789 TCACGGCGCAAAAGGGGACGTGCGGAGC--CGTCCTGACCCAGGAGGACATGCCCTTCGA 52846 |||||| |||||||| || ||| | ||| | ||| | ||||||||||| || Sbjct 13959 TCACGGT-CAAAAGGGCACCATCGGCGTGACGTACCGAC--AAGAGGACATGCCGTTTAC 13903 Query 52847 CAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGAC 52906 | ||| || ||| ||||||| ||||||||||||||||||| |||| || | ||||| Sbjct 13902 GAGGGAGGGCGTGACGCCCGACATCATCATCAACCCCCACGCTATTCCGTCGCGAATGAC 13843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406310182116048