Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tolypocladium_20sp._20Sup5_20PDA- 1_20[genbank_20GCA_5F000750105.3_202015-07-09] 464 sequences; 37,874,995 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq410 105 5e-18 >seq410 Length=1178163 Score = 105 bits (116), Expect = 5e-18 Identities = 273/407 (67%), Gaps = 22/407 (5%) Strand=Plus/Minus Query 29988 CACGTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 30044 |||||| ||||| | ||||| ||||| || || || |||||| || ||| || Sbjct 1092556 CACGTAGAACTGGGCAAACATG---TGGCAAGGCGGCAGGGCCATGCTCTTCAGGTCCTT 1092500 Query 30045 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTC 30101 ||||||||||| ||| ||| || || | ||| | || || ||| | || | Sbjct 1092499 TGGGTTCCAGGCAGACATGATTATACGGCGGTCGTACGGCTTCGTCCGCAGCTTGTGTAT 1092440 Query 30102 CACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGT 30160 |||| || || ||||| || || ||| |||| |||||||| | | ||| || Sbjct 1092439 CACGTCG----GCGAGCTGGTCGACGCCCTGGCCCGTGTAGTCTGTCTTTGCATCCACGT 1092384 Query 30161 ACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCC 30220 |||| || || || |||| ||||||||||||||| || || |||| || || | || | Sbjct 1092383 ACTCGGCGCCAAAGTGCCGCCACTGGAACCCGTAGACGGGCCCCAAATCGCCGACCTCGC 1092324 Query 30221 TGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTA 30280 |||| | ||| |||| | | || | || |||||| | ||||||||||| | Sbjct 1092323 GGTGCGACAGGCCGACGCTGTCGAGGTACTCGCGCGACCCGTTGCCATCCCAGATCTTGA 1092264 Query 30281 CCC---CCT-TCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGC 30336 | | ||| ||| | | | | || || | ||| |||| || ||||||||||||| Sbjct 1092263 CGCCGGCCTCGCTCAGCGCGAGCGATGACGTGT-TGG--CCTC-GATGAACCACAGCAGC 1092208 Query 30337 TCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 || | |||||||| ||| ||||| | ||| || || ||||| || Sbjct 1092207 TCGGCGACGACGGCTTTCAGGAAGACGCGCTTCGTGGTCAGGAGTGG 1092161 Score = 100 bits (110), Expect = 2e-16 Identities = 135/181 (75%), Gaps = 8/181 (4%) Strand=Plus/Plus Query 52016 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT- 52074 |||||||||| || || | ||| ||| | ||| |||| || |||||||||||||| Sbjct 326809 CGTCAAGGTGCGGGTGCGAACCACCAAGATCCCCCAGATCGGAGACAAGTTTGCGTCTCG 326868 Query 52075 TCACGGCGCAAAAGGGGACGTGCGGAGC--CGTCCTGACCCAGGAGGACATGCCCTTCGA 52132 |||||| |||||||| || ||| | ||| | ||| | ||||||||||| || | Sbjct 326869 TCACGGT-CAAAAGGGTACCATCGGCGTGACGTACCGAC--AAGAGGACATGCCGTT-TA 326924 Query 52133 CAAG-GACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCATCCAGGATGA 52191 | || || || ||| ||||||| ||||||||||||||||||| |||| || | |||| Sbjct 326925 CGAGAGAGGGCGTGACGCCCGACATCATCATCAACCCCCACGCTATTCCGTCGCGAATGA 326984 Query 52192 C 52192 | Sbjct 326985 C 326985 Score = 87.8 bits (96), Expect = 1e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 29791 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTG- 29849 ||||| ||| || | || ||||| || || |||| ||| ||||| |||| | ||| Sbjct 1092834 AGCTGCTCCTTGAGTGCATCGACGTGGTCGAGATAGATGTGGGCGTCCCCCATGACGTGC 1092775 Query 29850 GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTA 29909 | || || || || | ||| || || || | | ||||| ||| || || | ||| Sbjct 1092774 GTCAGGCTG-CCGGGCACCAGCTCGCACACATGGGAAAGCATGTGCGTCAGCAGCGCGTA 1092716 Query 29910 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 29969 |||||| ||||| || || || ||||| |||||||| | ||||||||||| |||||||| Sbjct 1092715 GCTGGCAATGTTGAACGGGACGCCGAGGCCCATGTCGCAGGACCTCTGGTACAGCTGACA 1092656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408615289267472