Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014-
12-05] 26 sequences; 28,476,206 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq1 311 9e-80
seq7 134 1e-26
seq3 111 2e-19
>seq1
Length=8525130
Score = 311 bits (344), Expect = 9e-80
Identities = 590/858 (69%), Gaps = 24/858 (3%)
Strand=Plus/Plus
Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650
||||||||| ||| ||||| | |||||||| | |||| || || |||| ||||||
Sbjct 3938966 GAGAACCCCAACCGCTTCGTTCTCTTCCCCATCAAGTACCACGAGATCTGGCAGATGTAC 3939025
Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710
|| ||||||||||| || |||||||| | ||| || | || || |||||||| | |
Sbjct 3939026 AAGAAGGCCGAGGCCTCATTCTGGACAGCCGAAGAAATCGATCTTTCCAAGGATCTGCAC 3939085
Query 116711 GACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767
|| ||| | || | ||||| ||||| | |||||| ||| | || |||||
Sbjct 3939086 GATTGGAACAACCGTCTCAACGATGACGAGAAATACTTCATCTCCCACATTCTTGCCTTC 3939145
Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTG 116827
|| |||||| ||||| || || |||||||| || ||||||| ||| | | |||||
Sbjct 3939146 TTTGCCGCCTCTGACGGTATTGTTAACGAGAACCTTCTCGAGCGCTTCTCCAACGAGGTC 3939205
Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887
||| | |||||| || ||||||||||| || |||||| ||||||||| | |||||
Sbjct 3939206 CAGATTCCCGAGGGTCGCTGCTTCTACGGTTTCCAGATCATGATGGAGAACATCCACTCT 3939265
Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTCGGAGGAGAAGCTCCG 116943
|| | || || || || || || ||||| | || || | || | ||
Sbjct 3939266 GAGACATACTCCCTGCTTATTGATACCTACGTCAAGGAGC-CTACCCAGCGCACATACC- 3939323
Query 116944 TTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCG 117003
| || |||||||| ||||| || || || || |||||||||| ||||| |||
Sbjct 3939324 --TCTTCAACGCCATTGAGACCATTCCCTGTATCCGCAAGAAGGCCGACTGGGCCCTGAA 3939381
Query 117004 CTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGA 117063
|||||| | | || | | |||| | |||| || || ||||| || ||||||||
Sbjct 3939382 GTGGATCTCTGACAAGAACTCTACCTTTGCTCAGCGTCTCGTTGCCTTTGCTGCCGTCGA 3939441
Query 117064 GGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCAT 117123
||| ||||||| || || || ||| |||| || ||||||||||| ||||| |||||
Sbjct 3939442 GGGTATCTTCTTCTCTGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCAT 3939501
Query 117124 GCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTT 117183
|||||| ||||| ||| ||||||||||||||| | ||||||||||| || ||||||
Sbjct 3939502 GCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTT 3939561
Query 117184 TGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG----AGCGCGGCGCGCGTCAGGG 117239
|||||| | ||| | || | || | |||| ||| || | | | |
Sbjct 3939562 TGCCTGCCTTCTGCACTCCCACCT----CAACAACCGTGCCAGCAAGGAGGTCATTGCCG 3939617
Query 117240 AGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGC 117299
||| |||| ||||| ||| |||| |||||| ||||| ||||| || || || |||
Sbjct 3939618 GCATCATCACTGACGCTGTCACCATTGAGCAGGAGTTCCTTACCGAGGCTCTTCC-TTGC 3939676
Query 117300 G-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGTCGCCGACAG 117357
| |||||| || | || || || | ||| ||| ||||| ||||||||||| || |
Sbjct 3939677 GCTCTGCTCGGCATGAA-CGCCAACCTCATGAAGCAGTACATTGAGTTCGTCGCTGATCG 3939735
Query 117358 GCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTAT 117417
|| || ||| || | | || ||| ||||| | ||||||| | ||||| ||
Sbjct 3939736 TCTCCTCGTCGCTCTTGGCAACGAGAAGATTTACAAGTCCACCAACCCCTTCGACTTCAT 3939795
Query 117418 GAACCTCATCT-CCTTGG 117434
| | ||||| ||||||
Sbjct 3939796 GGAGAACATCTCCCTTGG 3939813
Score = 120 bits (132), Expect = 3e-22
Identities = 135/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || ||||| || ||||| ||| |||| ||||| || | |||| | |
Sbjct 1347958 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTCGAGGTCGAGTCCTCGGACACCATC 1348017
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | || || |||||||| ||| | |||||||| || ||
Sbjct 1348018 GACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCTGACCAGCAGCGCCTG 1348077
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| ||||| || || | ||||||||| |||||||||||||||||||
Sbjct 1348078 ATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 1348137
Query 40879 G 40879
|
Sbjct 1348138 G 1348138
>seq7
Length=1200748
Score = 134 bits (148), Expect = 1e-26
Identities = 170/234 (73%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||||| || || || ||||| || || |||||| | || || || |
Sbjct 1041336 AAGATGCAGATTTTCGTCAAGACCCTTACGGGAAAGACGATCACCCTTGAGGTGGAGTCT 1041395
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
|||||| | | | | ||||| || || | || || ||||| |||||| | |||
Sbjct 1041396 TCCGACACCATTGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCCCCTGAC 1041455
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| || || |||| ||| ||||| ||||| || || | ||||||||| |||||||
Sbjct 1041456 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTAC 1041515
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920
||||||||||||||| |||| || || || || | ||| || | || || |||
Sbjct 1041516 AACATCCAGAAGGAGTCCACTCTCCACCTTGTCCTCCGCCTGCGTGGTGGTGGC 1041569
>seq3
Length=4610873
Score = 111 bits (122), Expect = 2e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | || || || ||||| ||| |||| || || | ||
Sbjct 3673874 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATTACCCTCGAGGTTGAGTCTTCC 3673815
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| ||||| || || | ||||| ||||||||||| | |||||
Sbjct 3673814 GACACTATTGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCA 3673756
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || || | || ||||| ||||| || || | |||||||| |||||||||
Sbjct 3673755 GCAGCGCCTGATTTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTTTCCGACTACAA 3673696
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||||| | || || ||||| ||
Sbjct 3673695 CATCCAGAAGGAATCTACCCTTCATCTCGT 3673666
Score = 105 bits (116), Expect = 7e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| || ||||| | || || || | |
Sbjct 3673418 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACGATCACATTGGAGGTTGAGTCTTCT 3673359
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| ||||| || |||| || || ||||| || || | |||||
Sbjct 3673358 GATACCATCGACAACG-TCAAGTCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGACCA 3673300
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| || |||| || || || ||||| || || | ||||| ||| ||||||||
Sbjct 3673299 GCAACGTCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAA 3673240
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||| ||||||||| ||| |||||||| ||
Sbjct 3673239 CATTCAGAAGGAGAGCACTCTGCATCTCGT 3673210
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || || || || || || ||||| || || || | || || || | |
Sbjct 3673646 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAGACTATTACATTAGAAGTTGAGTCATCG 3673587
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | ||||| ||| || | || || ||||| ||||| | || |||
Sbjct 3673586 GACACAATCGACAATGTCAAGTCAAAGATCCAAGATAAGGAGGGTATCCCTCCTGATCAG 3673527
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| || || || ||||| || |||| ||||| || | ||||||||||
Sbjct 3673526 CAGCGTCTTATCTTTGCCGGTAAGCAGCTCGAGGACGGTCGCACTCTGAGCGACTACAAC 3673467
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|| ||||||||| | || ||||| | ||| ||||
Sbjct 3673466 ATTCAGAAGGAGTCTACTCTGCACTTGGTGCTGCG 3673432
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515219032553760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |