Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014- 12-05] 26 sequences; 28,476,206 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 311 9e-80 seq7 134 1e-26 seq3 111 2e-19 >seq1 Length=8525130 Score = 311 bits (344), Expect = 9e-80 Identities = 590/858 (69%), Gaps = 24/858 (3%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 ||||||||| ||| ||||| | |||||||| | |||| || || |||| |||||| Sbjct 3938966 GAGAACCCCAACCGCTTCGTTCTCTTCCCCATCAAGTACCACGAGATCTGGCAGATGTAC 3939025 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710 || ||||||||||| || |||||||| | ||| || | || || |||||||| | | Sbjct 3939026 AAGAAGGCCGAGGCCTCATTCTGGACAGCCGAAGAAATCGATCTTTCCAAGGATCTGCAC 3939085 Query 116711 GACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767 || ||| | || | ||||| ||||| | |||||| ||| | || ||||| Sbjct 3939086 GATTGGAACAACCGTCTCAACGATGACGAGAAATACTTCATCTCCCACATTCTTGCCTTC 3939145 Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTG 116827 || |||||| ||||| || || |||||||| || ||||||| ||| | | ||||| Sbjct 3939146 TTTGCCGCCTCTGACGGTATTGTTAACGAGAACCTTCTCGAGCGCTTCTCCAACGAGGTC 3939205 Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887 ||| | |||||| || ||||||||||| || |||||| ||||||||| | ||||| Sbjct 3939206 CAGATTCCCGAGGGTCGCTGCTTCTACGGTTTCCAGATCATGATGGAGAACATCCACTCT 3939265 Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTCGGAGGAGAAGCTCCG 116943 || | || || || || || || ||||| | || || | || | || Sbjct 3939266 GAGACATACTCCCTGCTTATTGATACCTACGTCAAGGAGC-CTACCCAGCGCACATACC- 3939323 Query 116944 TTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCG 117003 | || |||||||| ||||| || || || || |||||||||| ||||| ||| Sbjct 3939324 --TCTTCAACGCCATTGAGACCATTCCCTGTATCCGCAAGAAGGCCGACTGGGCCCTGAA 3939381 Query 117004 CTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGA 117063 |||||| | | || | | |||| | |||| || || ||||| || |||||||| Sbjct 3939382 GTGGATCTCTGACAAGAACTCTACCTTTGCTCAGCGTCTCGTTGCCTTTGCTGCCGTCGA 3939441 Query 117064 GGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCAT 117123 ||| ||||||| || || || ||| |||| || ||||||||||| ||||| ||||| Sbjct 3939442 GGGTATCTTCTTCTCTGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCAT 3939501 Query 117124 GCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTT 117183 |||||| ||||| ||| ||||||||||||||| | ||||||||||| || |||||| Sbjct 3939502 GCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTT 3939561 Query 117184 TGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG----AGCGCGGCGCGCGTCAGGG 117239 |||||| | ||| | || | || | |||| ||| || | | | | Sbjct 3939562 TGCCTGCCTTCTGCACTCCCACCT----CAACAACCGTGCCAGCAAGGAGGTCATTGCCG 3939617 Query 117240 AGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGC 117299 ||| |||| ||||| ||| |||| |||||| ||||| ||||| || || || ||| Sbjct 3939618 GCATCATCACTGACGCTGTCACCATTGAGCAGGAGTTCCTTACCGAGGCTCTTCC-TTGC 3939676 Query 117300 G-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGTCGCCGACAG 117357 | |||||| || | || || || | ||| ||| ||||| ||||||||||| || | Sbjct 3939677 GCTCTGCTCGGCATGAA-CGCCAACCTCATGAAGCAGTACATTGAGTTCGTCGCTGATCG 3939735 Query 117358 GCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTAT 117417 || || ||| || | | || ||| ||||| | ||||||| | ||||| || Sbjct 3939736 TCTCCTCGTCGCTCTTGGCAACGAGAAGATTTACAAGTCCACCAACCCCTTCGACTTCAT 3939795 Query 117418 GAACCTCATCT-CCTTGG 117434 | | ||||| |||||| Sbjct 3939796 GGAGAACATCTCCCTTGG 3939813 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || ||||| ||| |||| ||||| || | |||| | | Sbjct 1347958 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTCGAGGTCGAGTCCTCGGACACCATC 1348017 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | || || |||||||| ||| | |||||||| || || Sbjct 1348018 GACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCTGACCAGCAGCGCCTG 1348077 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || || | ||||||||| ||||||||||||||||||| Sbjct 1348078 ATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 1348137 Query 40879 G 40879 | Sbjct 1348138 G 1348138 >seq7 Length=1200748 Score = 134 bits (148), Expect = 1e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || ||||| || || |||||| | || || || | Sbjct 1041336 AAGATGCAGATTTTCGTCAAGACCCTTACGGGAAAGACGATCACCCTTGAGGTGGAGTCT 1041395 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | | ||||| || || | || || ||||| |||||| | ||| Sbjct 1041396 TCCGACACCATTGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCCCCTGAC 1041455 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| ||||| || || | ||||||||| ||||||| Sbjct 1041456 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTAC 1041515 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 ||||||||||||||| |||| || || || || | ||| || | || || ||| Sbjct 1041516 AACATCCAGAAGGAGTCCACTCTCCACCTTGTCCTCCGCCTGCGTGGTGGTGGC 1041569 >seq3 Length=4610873 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||| ||| |||| || || | || Sbjct 3673874 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATTACCCTCGAGGTTGAGTCTTCC 3673815 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || || | ||||| ||||||||||| | ||||| Sbjct 3673814 GACACTATTGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCA 3673756 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | || ||||| ||||| || || | |||||||| ||||||||| Sbjct 3673755 GCAGCGCCTGATTTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTTTCCGACTACAA 3673696 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || ||||| || Sbjct 3673695 CATCCAGAAGGAATCTACCCTTCATCTCGT 3673666 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| || ||||| | || || || | | Sbjct 3673418 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACGATCACATTGGAGGTTGAGTCTTCT 3673359 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| || |||| || || ||||| || || | ||||| Sbjct 3673358 GATACCATCGACAACG-TCAAGTCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGACCA 3673300 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| || || || ||||| || || | ||||| ||| |||||||| Sbjct 3673299 GCAACGTCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAA 3673240 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| ||| |||||||| || Sbjct 3673239 CATTCAGAAGGAGAGCACTCTGCATCTCGT 3673210 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || ||||| || || || | || || || | | Sbjct 3673646 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAGACTATTACATTAGAAGTTGAGTCATCG 3673587 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| ||| || | || || ||||| ||||| | || ||| Sbjct 3673586 GACACAATCGACAATGTCAAGTCAAAGATCCAAGATAAGGAGGGTATCCCTCCTGATCAG 3673527 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || || ||||| || |||| ||||| || | |||||||||| Sbjct 3673526 CAGCGTCTTATCTTTGCCGGTAAGCAGCTCGAGGACGGTCGCACTCTGAGCGACTACAAC 3673467 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||||||| | || ||||| | ||| |||| Sbjct 3673466 ATTCAGAAGGAGTCTACTCTGCACTTGGTGCTGCG 3673432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219032553760