Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014-
12-05] 26 sequences; 28,476,206 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq3 143 2e-29
seq1 104 2e-17
seq7 102 7e-17
>seq3
Length=4610873
Score = 143 bits (158), Expect = 2e-29
Identities = 169/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | | || ||||||||| | |||||||| || ||||||||||| ||||
Sbjct 3673418 TACCACCACGGAGACGCAGCACCAAGTGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGC 3673477
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
||| |||||| ||||||||||| || || || |||| |||||||||||||| ||||
Sbjct 3673478 TCAGAGTGCGACCGTCCTCGAGCTGCTTACCGGCAAAGATAAGACGCTGCTGATCAGGAG 3673537
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| || |||||||| ||| || ||| || || | |||| ||||||| ||| |
Sbjct 3673538 GGATACCCTCCTTATCTTGGATCTTTGACTTGACATTGTCGATTGTGTCCGATGACTCAA 3673597
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
| || | || | || ||||| || ||||| || ||||| || |||||
Sbjct 3673598 CTTCTAATGTAATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 3673646
Score = 98.7 bits (108), Expect = 9e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606
||| || ||||||||||| || | |||||| ||| || ||||| || ||||| |
Sbjct 3673227 CTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCAAGCTGCTTACCAGCAAA 3673286
Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666
||| ||||| ||||| || ||||| || |||||||| || ||| || || || |
Sbjct 3673287 GATAAGACGTTGCTGGTCAGGAGGAATACCCTCCTTATCCTGAATCTTCGACTTGACGTT 3673346
Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726
|||| ||| || | ||| ||||| | || | ||| |||||||| || || || ||
Sbjct 3673347 GTCGATGGTATCAGAAGACTCAACCTCCAATGTGATCGTCTTGCCGGTGAGGGTCTTGAC 3673406
Query 118727 AAAAATCTGCAT 118738
|||||||||||
Sbjct 3673407 GAAAATCTGCAT 3673418
Score = 91.5 bits (100), Expect = 1e-13
Identities = 121/168 (72%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606
||| || |||||||||||||| | ||||| |||||||||||| || |||||| |
Sbjct 3673911 CTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAA 3673970
Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666
|| || |||||||| || || || || ||||||||||| ||| || || || |
Sbjct 3673971 AATCAGGCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTT 3674030
Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
|| | |||||| | ||| ||||||| ||| | || ||||||||
Sbjct 3674031 GTCAATGGTGTCGGAAGACTCAACCTCGAGGGTAATGGTCTTGCCGGT 3674078
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
||||| || || || |||||||| ||| | ||||| ||| || ||||| || ||
Sbjct 3673678 GTAGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCTTCAAGCTGCTTGCCG 3673737
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
|| | || || |||||||| || ||||| |||||||||||||| || || ||
Sbjct 3673738 GCAAAAATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTG 3673797
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | ||||| | ||| ||||||| ||| | || || ||||||| |||
Sbjct 3673798 ACGTTGTCAATAGTGTCGGAAGACTCAACCTCGAGGGTAATGGTCTTTCCGGTCAAAGTC 3673857
Query 118722 TTTACAAAAATCTGCAT 118738
|| || || ||||||||
Sbjct 3673858 TTGACGAAGATCTGCAT 3673874
>seq1
Length=8525130
Score = 104 bits (114), Expect = 2e-17
Identities = 131/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| || |||||||| ||| | ||||| |||||||||||| || |||||| ||||
Sbjct 1348136 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 1348077
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
|| |||||||| || || || ||||||||||| || || || || || | |||
Sbjct 1348076 AGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCG 1348017
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730
| |||||||| | ||||||||||| ||| | || || || ||||| || || || |||
Sbjct 1348016 ATGGTGTCCGAGGACTCGACCTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 1347957
>seq7
Length=1200748
Score = 102 bits (112), Expect = 7e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||||| || ||||| || || |||||||| ||| | ||||| ||||||||||||
Sbjct 1041542 GTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTG 1041483
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654
|| |||||| |||| || |||||||| || || || || |||||||| || || ||
Sbjct 1041482 CTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTATCCTGGATCTT 1041423
Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
|| || | || | |||||| | ||| ||||| | ||| | ||| || || ||
Sbjct 1041422 GGACTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTTCCCGT 1041363
Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738
|| || || || |||||||||||
Sbjct 1041362 AAGGGTCTTGACGAAAATCTGCAT 1041339
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433830262529992
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |