Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014- 12-05] 26 sequences; 28,476,206 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3 102 9e-17 seq7 86.0 7e-12 >seq3 Length=4610873 Score = 102 bits (112), Expect = 9e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||||| |||| || |||||| ||||| ||||| || |||||| || | Sbjct 3673431 ACGCAGCACCAAGTGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGACC 3673490 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || ||||||||||| || || || || |||||||| || | || | | |||||| Sbjct 3673491 GTCCTCGAGCTGCTTACCGGCAAAGATAAGACGCTGCTGATCAGGAGGGATACCCTCCTT 3673550 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 || ||| ||| |||| | | | ||||| || || || || | || || Sbjct 3673551 ATCTTGGATCTTTGACTTGACATTGTCGATTGTGTCCGATGACTCAACTTCTAATGTAAT 3673610 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || ||||| |||||||||||||| Sbjct 3673611 AGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 3673646 Score = 98.7 bits (108), Expect = 1e-15 Identities = 130/175 (74%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| ||||| |||||||||| || || || | || || |||||||| ||| Sbjct 3673906 GTGCTCTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 3673965 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTT 43105 ||||| || || ||||||||||| | || | | |||||||||| ||| | || | || Sbjct 3673966 GCGAAAATCAGGCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCC-TGAATCTTGGACTT 3674024 Query 43106 GAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 || ||| | | | |||||| || || || |||| || ||||| ||||| || Sbjct 3674025 GA-CGTTGTCAATGGTGTCGGAAGACTCAACCTCGAGGGTAATGGTCTTGCCGGT 3674078 Score = 96.9 bits (106), Expect = 4e-15 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039 ||||| ||||||||||| ||||| ||||| |||| ||||| || | || || ||||| Sbjct 3673215 ATGCAGAGTGCTCTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCAAGCTG 3673274 Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 ||||||||| || || || || |||||||| | || | | |||||| ||| ||| | | Sbjct 3673275 CTTACCAGCAAAGATAAGACGTTGCTGGTCAGGAGGAATACCCTCCTTATCC-TGAATCT 3673333 Query 43100 TTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCC 43157 | | |||| ||| | | | || || || || || || | ||||| || ||||| Sbjct 3673334 TCGACTTGA-CGTTGTCGATGGTATCAGAAGACTCAACCTCCAATGTGATCGTCTTGCCG 3673392 Query 43158 GTTAGCGTCTTTACAAAGATTTGCAT 43183 || || ||||| || || || ||||| Sbjct 3673393 GTGAGGGTCTTGACGAAAATCTGCAT 3673418 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || | || || || | || || |||||||| || || || Sbjct 3673684 TCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAA 3673743 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 3673744 ATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGA-CGTT 3673802 Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | |||||| || || || |||| || ||||| || || || | ||||| || Sbjct 3673803 GTCAATAGTGTCGGAAGACTCAACCTCGAGGGTAATGGTCTTTCCGGTCAAAGTCTTGAC 3673862 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 3673863 GAAGATCTGCAT 3673874 >seq7 Length=1200748 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || | || || |||||||| |||||||| Sbjct 1041530 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAA 1041471 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | |||||| ||| ||| || |||| | Sbjct 1041470 GATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTATCCTGGATCTTGGACTTGACATT 1041411 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || ||||| || | ||||| || || ||||| || ||||| || Sbjct 1041410 GTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTTCCCGTAAGGGTCTTGAC 1041351 Query 43172 AAAGATTTGCATTTT 43186 || || ||||| || Sbjct 1041350 GAAAATCTGCATCTT 1041336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817414159280