Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014-
12-05] 26 sequences; 28,476,206 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq3 98.7 6e-16
seq7 96.9 2e-15
seq1 84.2 1e-11
>seq3
Length=4610873
Score = 98.7 bits (108), Expect = 6e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||| ||||| |||||||||||||| || ||| | || || | ||||||||| || ||
Sbjct 3673683 TTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAA 3673742
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317
||| || ||||||||||| || | || ||||||||| ||||| ||| | |
Sbjct 3673743 AATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTT 3673802
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| | || | |||| || || || || | || ||||| || ||||| | ||| || ||
Sbjct 3673803 GTCAATAGTGTCGGAAGACTCAACCTCGAGGGTAATGGTCTTTCCGGTCAAAGTCTTGAC 3673862
Query 34378 AAAGATCTGCAT 34389
|||||||||||
Sbjct 3673863 GAAGATCTGCAT 3673874
Score = 95.1 bits (104), Expect = 8e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| |||||||| | || || || || | ||| || || ||||| ||||||||||| ||
Sbjct 3673192 CCACCGCGCAGACGGAGGACGAGATGCAGAGTGCTCTCCTTCTGAATGTTGTAGTCAGAG 3673251
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || || | |||||| || || || || || || |||||||| ||
Sbjct 3673252 AGAGTGCGGCCATCTTCAAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCAGGAGGA 3673311
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | |||||| || ||||| ||| | | | | || | ||| | || || ||
Sbjct 3673312 ATACCCTCCTTATCCTGAATCTTCGACTTGACGTTGTCGATGGTATCAGAAGACTCAACC 3673371
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| ||||| || ||||||||||| || || || || ||||||||
Sbjct 3673372 TCCAATGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 3673418
Score = 89.7 bits (98), Expect = 3e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || || | |||||||| ||| | |||| || ||||| |||||||||||| |
Sbjct 3673420 CCACCACGGAGACGCAGCACCAAGTGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGCTC 3673479
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || |||| || | |||||| || || || || || |||||||| || ||
Sbjct 3673480 AGAGTGCGACCGTCCTCGAGCTGCTTACCGGCAAAGATAAGACGCTGCTGATCAGGAGGG 3673539
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | |||||| || |||||| ||| | || | | || | || | || || ||
Sbjct 3673540 ATACCCTCCTTATCTTGGATCTTTGACTTGACATTGTCGATTGTGTCCGATGACTCAACT 3673599
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | || || || ||||| || ||||| || |||||||| |||||
Sbjct 3673600 TCTAATGTAATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 3673646
Score = 86.0 bits (94), Expect = 4e-12
Identities = 133/190 (70%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| || ||||| | || || || ||||| |||||||| || || || ||| | ||
Sbjct 3673891 AGGACGAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCATCC 3673950
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | ||||||||| |||||||| || ||||||||||| ||| | | |||||||||
Sbjct 3673951 TCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCC 3674010
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | | | | || | |||| || || || || | || |||||
Sbjct 3674011 TGAATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCAACCTCGAGGGTAATGGTC 3674070
Query 34358 TTGCCGGTGA 34367
||||||||||
Sbjct 3674071 TTGCCGGTGA 3674080
>seq7
Length=1200748
Score = 96.9 bits (106), Expect = 2e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | || || ||||| | ||| || ||||| ||||||||||||||
Sbjct 1041565 CCACCACGCAGGCGGAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1041506
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || || | ||||||||| ||||| || || ||||||||||| |||
Sbjct 1041505 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 1041446
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | |||||| || ||||| ||| | || | | || | |||| || || ||
Sbjct 1041445 ATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCACC 1041386
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| | ||||| || || || || || || || || || |||||||||
Sbjct 1041385 TCAAGGGTGATCGTCTTTCCCGTAAGGGTCTTGACGAAAATCTGCATC 1041338
>seq1
Length=8525130
Score = 84.2 bits (92), Expect = 1e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261
||||| |||||||||||||| || ||| | || || | ||||||||| ||||| ||
Sbjct 1348136 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 1348077
Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321
|| ||||||||||| ||| | || |||||| || ||||| ||| | || | |
Sbjct 1348076 AGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCG 1348017
Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380
|| | || | || ||||| || | || ||||| || || || || || ||||| ||
Sbjct 1348016 ATGGTGTCCGAGGACTCGACCTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 1347958
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323071897626560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |