Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014- 12-05] 26 sequences; 28,476,206 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1 127 4e-24 >seq1 Length=8525130 Score = 127 bits (140), Expect = 4e-24 Identities = 120/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 |||||||||||||| || || || |||||||| |||||| || || ||||| |||||| Sbjct 3939422 GTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCTCTGGTGCCTTTGCCTCCATCTTCTGG 3939481 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | ||| | |||| ||||| |||| |||||| ||| |||| ||| | ||| Sbjct 3939482 CTCAAGAAGCGCGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGAC 3939541 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTG 102070 || |||||||| ||||||||| ||| | ||| Sbjct 3939542 GAGGGTCTTCACACCGACTTTGCCTGCCTTCTG 3939574 Score = 95.1 bits (104), Expect = 2e-14 Identities = 137/192 (71%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 94398 GCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAG 94457 ||| |||||||| || |||||||||| |||| || || || || | | |||| ||| Sbjct 556838 GCCCTCAGCCTCGTACTTCTCGTACAGGGCCTCGAATTCCTCACCGTAGCAATCGGCAAG 556897 Query 94458 GCCAGGGCACTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC---ACTCTCTC 94514 |||||||||||||| ||||||||| |||| ||| || || |||| || | || Sbjct 556898 GCCAGGGCACTCGTTGGGGCACATGAGGGTCCA---CTCTCCGTTCTTCTCAACACGCTT 556954 Query 94515 CATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAATCTTCATT 94574 |||||| ||||| | | ||||| ||| |||| ||||| | | | | ||||| || Sbjct 556955 CATGAAAAGATCGGGAATCCAGAGAGCAAGGAAGAGATCACGGGCACGGACTTCTTCCTT 557014 Query 94575 ACCGGCATTCTT 94586 ||| |||||| Sbjct 557015 ACCATGATTCTT 557026 Score = 87.8 bits (96), Expect = 4e-12 Identities = 170/251 (68%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851 || ||||| |||||||||| || || ||| || ||||| ||||||||||||||| Sbjct 557232 CCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGGGTATCGTAAATACCCTCAATG 557291 Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTTCCACAA 94911 ||||| || | | | | | | |||||| || ||||| ||| | ||| || Sbjct 557292 CTATCCTCCTTCATGTCAACCAAGAAGCAGGAAGAAAGCTGGCACTGGGGTGTACCGGCG 557351 Query 94912 TTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCA 94971 || || || || ||||| |||||||| || | | | |||||||| | || || || Sbjct 557352 TTGAAGAGGGTAGGGGAGGCATGGGTGAAGAACTTGTTAGACATGAGGTTGTAGGTCTCG 557411 Query 94972 ATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGA 95031 | ||| | ||||| || ||| |||||||| || | ||| ||||||| ||| Sbjct 557412 AGAACACGCTCGATGTTGTCACCCCAAATACCGACAGCGACTCTCATGATCATGTGCTGG 557471 Query 95032 GGGCGCTCAAC 95042 || ||||| || Sbjct 557472 GGACGCTCGAC 557482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583670344830